miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24055 3' -51.7 NC_005262.1 + 10915 0.66 0.92883
Target:  5'- aGCGCGGCGgacgcgcauGCGcUGGuCGUGAUCgucGCGg -3'
miRNA:   3'- -CGCGCUGC---------UGC-ACUcGUACUAGa--UGC- -5'
24055 3' -51.7 NC_005262.1 + 57003 0.66 0.92883
Target:  5'- aGCGCGACGA-GUucucGGGCGcGAUCUuCa -3'
miRNA:   3'- -CGCGCUGCUgCA----CUCGUaCUAGAuGc -5'
24055 3' -51.7 NC_005262.1 + 30853 0.66 0.923044
Target:  5'- cGCGCGagGCGAgGUaGGCAUcacGAUCgGCGg -3'
miRNA:   3'- -CGCGC--UGCUgCAcUCGUA---CUAGaUGC- -5'
24055 3' -51.7 NC_005262.1 + 62702 0.66 0.91698
Target:  5'- aGCGCGACGAUG-GGuaaucgcgcacGCAcccUGAUCgGCGc -3'
miRNA:   3'- -CGCGCUGCUGCaCU-----------CGU---ACUAGaUGC- -5'
24055 3' -51.7 NC_005262.1 + 6603 0.66 0.910638
Target:  5'- aGCGUGACGGCGagGucGGCGcgcUGAUCgucgaGCGg -3'
miRNA:   3'- -CGCGCUGCUGCa-C--UCGU---ACUAGa----UGC- -5'
24055 3' -51.7 NC_005262.1 + 60084 0.67 0.904022
Target:  5'- cGCGCGACG-CGcugacGGGCAcGAUCaACa -3'
miRNA:   3'- -CGCGCUGCuGCa----CUCGUaCUAGaUGc -5'
24055 3' -51.7 NC_005262.1 + 61160 0.67 0.899921
Target:  5'- uCGCGGCGGCGggcGAGCugacgggcgcgcgGcgCUACGa -3'
miRNA:   3'- cGCGCUGCUGCa--CUCGua-----------CuaGAUGC- -5'
24055 3' -51.7 NC_005262.1 + 29256 0.67 0.897133
Target:  5'- -gGCGACGGCcgccUGAcGCAUGGUCgcGCGc -3'
miRNA:   3'- cgCGCUGCUGc---ACU-CGUACUAGa-UGC- -5'
24055 3' -51.7 NC_005262.1 + 55025 0.67 0.897133
Target:  5'- aCGCGGuCGGCGcGGGCAagacguucacgaUGAUCgcgACGg -3'
miRNA:   3'- cGCGCU-GCUGCaCUCGU------------ACUAGa--UGC- -5'
24055 3' -51.7 NC_005262.1 + 31296 0.67 0.89287
Target:  5'- cGCGCGAucuugccugacuuguCGGC--GAGCGUGAUCgucGCGu -3'
miRNA:   3'- -CGCGCU---------------GCUGcaCUCGUACUAGa--UGC- -5'
24055 3' -51.7 NC_005262.1 + 48102 0.67 0.889975
Target:  5'- cGCGCGAUGAUGUGAcgcgccgcgcGCAaGAgcUCgGCGu -3'
miRNA:   3'- -CGCGCUGCUGCACU----------CGUaCU--AGaUGC- -5'
24055 3' -51.7 NC_005262.1 + 40424 0.67 0.882553
Target:  5'- aGCGCGcCGGcCGUGAGCcgAUGcUCgaaGCGg -3'
miRNA:   3'- -CGCGCuGCU-GCACUCG--UACuAGa--UGC- -5'
24055 3' -51.7 NC_005262.1 + 21825 0.67 0.877975
Target:  5'- uGCGCGAUcuucCGUGAGCGccuUGAggccguccuugccgaUCUGCGu -3'
miRNA:   3'- -CGCGCUGcu--GCACUCGU---ACU---------------AGAUGC- -5'
24055 3' -51.7 NC_005262.1 + 25173 0.67 0.874872
Target:  5'- gGCGCGuCGuCGUGuucaaGGguUGAUgCUGCGg -3'
miRNA:   3'- -CGCGCuGCuGCAC-----UCguACUA-GAUGC- -5'
24055 3' -51.7 NC_005262.1 + 12932 0.67 0.874872
Target:  5'- uGCGCGGCG-CGcugaaGGGCGUGcgCgACGg -3'
miRNA:   3'- -CGCGCUGCuGCa----CUCGUACuaGaUGC- -5'
24055 3' -51.7 NC_005262.1 + 48117 0.68 0.866939
Target:  5'- gGCGCGGcCGGC-UGcuGCGUGGUCUGgGu -3'
miRNA:   3'- -CGCGCU-GCUGcACu-CGUACUAGAUgC- -5'
24055 3' -51.7 NC_005262.1 + 63086 0.68 0.858759
Target:  5'- aUGCGGCGGCGUGcaaGGCGcugcUGAaCUACc -3'
miRNA:   3'- cGCGCUGCUGCAC---UCGU----ACUaGAUGc -5'
24055 3' -51.7 NC_005262.1 + 62177 0.68 0.858759
Target:  5'- cCGCGGCGGCGac-GCAUGAggucgagaagCUACGc -3'
miRNA:   3'- cGCGCUGCUGCacuCGUACUa---------GAUGC- -5'
24055 3' -51.7 NC_005262.1 + 36079 0.68 0.850341
Target:  5'- cGCGCGGC-ACGUGGaacGCAcGAUCccGCGg -3'
miRNA:   3'- -CGCGCUGcUGCACU---CGUaCUAGa-UGC- -5'
24055 3' -51.7 NC_005262.1 + 55288 0.68 0.841693
Target:  5'- -aGCGACGGCGguUGuGCGUGuggaaauUCUGCu -3'
miRNA:   3'- cgCGCUGCUGC--ACuCGUACu------AGAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.