Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24055 | 3' | -51.7 | NC_005262.1 | + | 30853 | 0.66 | 0.923044 |
Target: 5'- cGCGCGagGCGAgGUaGGCAUcacGAUCgGCGg -3' miRNA: 3'- -CGCGC--UGCUgCAcUCGUA---CUAGaUGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 57003 | 0.66 | 0.92883 |
Target: 5'- aGCGCGACGA-GUucucGGGCGcGAUCUuCa -3' miRNA: 3'- -CGCGCUGCUgCA----CUCGUaCUAGAuGc -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 62702 | 0.66 | 0.91698 |
Target: 5'- aGCGCGACGAUG-GGuaaucgcgcacGCAcccUGAUCgGCGc -3' miRNA: 3'- -CGCGCUGCUGCaCU-----------CGU---ACUAGaUGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 10915 | 0.66 | 0.92883 |
Target: 5'- aGCGCGGCGgacgcgcauGCGcUGGuCGUGAUCgucGCGg -3' miRNA: 3'- -CGCGCUGC---------UGC-ACUcGUACUAGa--UGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 6603 | 0.66 | 0.910638 |
Target: 5'- aGCGUGACGGCGagGucGGCGcgcUGAUCgucgaGCGg -3' miRNA: 3'- -CGCGCUGCUGCa-C--UCGU---ACUAGa----UGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 40424 | 0.67 | 0.882553 |
Target: 5'- aGCGCGcCGGcCGUGAGCcgAUGcUCgaaGCGg -3' miRNA: 3'- -CGCGCuGCU-GCACUCG--UACuAGa--UGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 12932 | 0.67 | 0.874872 |
Target: 5'- uGCGCGGCG-CGcugaaGGGCGUGcgCgACGg -3' miRNA: 3'- -CGCGCUGCuGCa----CUCGUACuaGaUGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 55025 | 0.67 | 0.897133 |
Target: 5'- aCGCGGuCGGCGcGGGCAagacguucacgaUGAUCgcgACGg -3' miRNA: 3'- cGCGCU-GCUGCaCUCGU------------ACUAGa--UGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 61160 | 0.67 | 0.899921 |
Target: 5'- uCGCGGCGGCGggcGAGCugacgggcgcgcgGcgCUACGa -3' miRNA: 3'- cGCGCUGCUGCa--CUCGua-----------CuaGAUGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 31296 | 0.67 | 0.89287 |
Target: 5'- cGCGCGAucuugccugacuuguCGGC--GAGCGUGAUCgucGCGu -3' miRNA: 3'- -CGCGCU---------------GCUGcaCUCGUACUAGa--UGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 60084 | 0.67 | 0.904022 |
Target: 5'- cGCGCGACG-CGcugacGGGCAcGAUCaACa -3' miRNA: 3'- -CGCGCUGCuGCa----CUCGUaCUAGaUGc -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 29256 | 0.67 | 0.897133 |
Target: 5'- -gGCGACGGCcgccUGAcGCAUGGUCgcGCGc -3' miRNA: 3'- cgCGCUGCUGc---ACU-CGUACUAGa-UGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 25173 | 0.67 | 0.874872 |
Target: 5'- gGCGCGuCGuCGUGuucaaGGguUGAUgCUGCGg -3' miRNA: 3'- -CGCGCuGCuGCAC-----UCguACUA-GAUGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 21825 | 0.67 | 0.877975 |
Target: 5'- uGCGCGAUcuucCGUGAGCGccuUGAggccguccuugccgaUCUGCGu -3' miRNA: 3'- -CGCGCUGcu--GCACUCGU---ACU---------------AGAUGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 48102 | 0.67 | 0.889975 |
Target: 5'- cGCGCGAUGAUGUGAcgcgccgcgcGCAaGAgcUCgGCGu -3' miRNA: 3'- -CGCGCUGCUGCACU----------CGUaCU--AGaUGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 63086 | 0.68 | 0.858759 |
Target: 5'- aUGCGGCGGCGUGcaaGGCGcugcUGAaCUACc -3' miRNA: 3'- cGCGCUGCUGCAC---UCGU----ACUaGAUGc -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 36079 | 0.68 | 0.850341 |
Target: 5'- cGCGCGGC-ACGUGGaacGCAcGAUCccGCGg -3' miRNA: 3'- -CGCGCUGcUGCACU---CGUaCUAGa-UGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 62177 | 0.68 | 0.858759 |
Target: 5'- cCGCGGCGGCGac-GCAUGAggucgagaagCUACGc -3' miRNA: 3'- cGCGCUGCUGCacuCGUACUa---------GAUGC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 48117 | 0.68 | 0.866939 |
Target: 5'- gGCGCGGcCGGC-UGcuGCGUGGUCUGgGu -3' miRNA: 3'- -CGCGCU-GCUGcACu-CGUACUAGAUgC- -5' |
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24055 | 3' | -51.7 | NC_005262.1 | + | 55288 | 0.68 | 0.841693 |
Target: 5'- -aGCGACGGCGguUGuGCGUGuggaaauUCUGCu -3' miRNA: 3'- cgCGCUGCUGC--ACuCGUACu------AGAUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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