miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24055 3' -51.7 NC_005262.1 + 57972 0.68 0.832823
Target:  5'- uGCGCGAucuucaCGACGcagGAGCAUGGaC-ACGg -3'
miRNA:   3'- -CGCGCU------GCUGCa--CUCGUACUaGaUGC- -5'
24055 3' -51.7 NC_005262.1 + 56044 0.68 0.832823
Target:  5'- -gGCucCGGCGUGAcCAUGAUCUgACGg -3'
miRNA:   3'- cgCGcuGCUGCACUcGUACUAGA-UGC- -5'
24055 3' -51.7 NC_005262.1 + 34496 0.69 0.795315
Target:  5'- cGCGCGGCGGCGc--GCGacuUCUGCGa -3'
miRNA:   3'- -CGCGCUGCUGCacuCGUacuAGAUGC- -5'
24055 3' -51.7 NC_005262.1 + 34006 0.69 0.795315
Target:  5'- gGCGCgGACGGCGUGAcGCcgGGccgcaUCgUGCGc -3'
miRNA:   3'- -CGCG-CUGCUGCACU-CGuaCU-----AG-AUGC- -5'
24055 3' -51.7 NC_005262.1 + 56957 0.7 0.765348
Target:  5'- cGCGCgGGCGAguuCGcGGGCGUGGUCgGCa -3'
miRNA:   3'- -CGCG-CUGCU---GCaCUCGUACUAGaUGc -5'
24055 3' -51.7 NC_005262.1 + 58952 0.7 0.765348
Target:  5'- cGCGCGGagcugcgcCGGCGUGA-CGUcgccGAUCUGCGu -3'
miRNA:   3'- -CGCGCU--------GCUGCACUcGUA----CUAGAUGC- -5'
24055 3' -51.7 NC_005262.1 + 22341 0.7 0.748838
Target:  5'- -gGCGACGGCGUGAugcgcaggccggccgGCGUGggCggcGCGg -3'
miRNA:   3'- cgCGCUGCUGCACU---------------CGUACuaGa--UGC- -5'
24055 3' -51.7 NC_005262.1 + 11375 0.7 0.723516
Target:  5'- --cCGACGACGccaGAGCAUGAacgggCUGCGa -3'
miRNA:   3'- cgcGCUGCUGCa--CUCGUACUa----GAUGC- -5'
24055 3' -51.7 NC_005262.1 + 56607 0.71 0.69114
Target:  5'- cGCGCGugGGCGacgaaGGGCAg---CUACGa -3'
miRNA:   3'- -CGCGCugCUGCa----CUCGUacuaGAUGC- -5'
24055 3' -51.7 NC_005262.1 + 49666 0.71 0.680219
Target:  5'- -gGCGGCGGCaUGGGgAUGGUCgGCGg -3'
miRNA:   3'- cgCGCUGCUGcACUCgUACUAGaUGC- -5'
24055 3' -51.7 NC_005262.1 + 52908 0.72 0.647222
Target:  5'- -aGCGAgGGCGUGAuccGCucGAUCUACGa -3'
miRNA:   3'- cgCGCUgCUGCACU---CGuaCUAGAUGC- -5'
24055 3' -51.7 NC_005262.1 + 28300 0.72 0.636181
Target:  5'- uGCGCGcaaGCG-CGUGcGCAUGAUCgagGCa -3'
miRNA:   3'- -CGCGC---UGCuGCACuCGUACUAGa--UGc -5'
24055 3' -51.7 NC_005262.1 + 38535 0.72 0.614098
Target:  5'- -gGCGACGAgCGUGccgucguccGGCGUGAUCU-CGa -3'
miRNA:   3'- cgCGCUGCU-GCAC---------UCGUACUAGAuGC- -5'
24055 3' -51.7 NC_005262.1 + 58793 0.73 0.599773
Target:  5'- gGCGCugggucGACGACGUGAucggcgccgugaagGCAUGGcugCUGCGg -3'
miRNA:   3'- -CGCG------CUGCUGCACU--------------CGUACUa--GAUGC- -5'
24055 3' -51.7 NC_005262.1 + 26920 0.73 0.570193
Target:  5'- cGCGCGACGAUcccGAGCcgGAUUcGCGc -3'
miRNA:   3'- -CGCGCUGCUGca-CUCGuaCUAGaUGC- -5'
24055 3' -51.7 NC_005262.1 + 12553 0.74 0.548512
Target:  5'- cGCGCGGCGcccCGUGAGCGacGUCUcgACGa -3'
miRNA:   3'- -CGCGCUGCu--GCACUCGUacUAGA--UGC- -5'
24055 3' -51.7 NC_005262.1 + 35762 0.74 0.537767
Target:  5'- cGUGCccgcuCGACGUGAGCAcGAgCUGCGg -3'
miRNA:   3'- -CGCGcu---GCUGCACUCGUaCUaGAUGC- -5'
24055 3' -51.7 NC_005262.1 + 59076 0.74 0.527096
Target:  5'- aGCGCGACGGCGcggGAGgCGUGAggccgCcgGCGg -3'
miRNA:   3'- -CGCGCUGCUGCa--CUC-GUACUa----Ga-UGC- -5'
24055 3' -51.7 NC_005262.1 + 28578 0.74 0.505999
Target:  5'- cGCGCGACGGCaUGcccuacGGCGUGAUCcGCu -3'
miRNA:   3'- -CGCGCUGCUGcAC------UCGUACUAGaUGc -5'
24055 3' -51.7 NC_005262.1 + 47655 0.75 0.485273
Target:  5'- aGCGCGA-GGCGaucGAGCAggacaugaagcUGAUCUACGg -3'
miRNA:   3'- -CGCGCUgCUGCa--CUCGU-----------ACUAGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.