miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24055 3' -51.7 NC_005262.1 + 43950 1.12 0.002081
Target:  5'- uGCGCGACGACGUGAGCAUGAUCUACGa -3'
miRNA:   3'- -CGCGCUGCUGCACUCGUACUAGAUGC- -5'
24055 3' -51.7 NC_005262.1 + 63086 0.68 0.858759
Target:  5'- aUGCGGCGGCGUGcaaGGCGcugcUGAaCUACc -3'
miRNA:   3'- cGCGCUGCUGCAC---UCGU----ACUaGAUGc -5'
24055 3' -51.7 NC_005262.1 + 12932 0.67 0.874872
Target:  5'- uGCGCGGCG-CGcugaaGGGCGUGcgCgACGg -3'
miRNA:   3'- -CGCGCUGCuGCa----CUCGUACuaGaUGC- -5'
24055 3' -51.7 NC_005262.1 + 48102 0.67 0.889975
Target:  5'- cGCGCGAUGAUGUGAcgcgccgcgcGCAaGAgcUCgGCGu -3'
miRNA:   3'- -CGCGCUGCUGCACU----------CGUaCU--AGaUGC- -5'
24055 3' -51.7 NC_005262.1 + 55025 0.67 0.897133
Target:  5'- aCGCGGuCGGCGcGGGCAagacguucacgaUGAUCgcgACGg -3'
miRNA:   3'- cGCGCU-GCUGCaCUCGU------------ACUAGa--UGC- -5'
24055 3' -51.7 NC_005262.1 + 61160 0.67 0.899921
Target:  5'- uCGCGGCGGCGggcGAGCugacgggcgcgcgGcgCUACGa -3'
miRNA:   3'- cGCGCUGCUGCa--CUCGua-----------CuaGAUGC- -5'
24055 3' -51.7 NC_005262.1 + 60084 0.67 0.904022
Target:  5'- cGCGCGACG-CGcugacGGGCAcGAUCaACa -3'
miRNA:   3'- -CGCGCUGCuGCa----CUCGUaCUAGaUGc -5'
24055 3' -51.7 NC_005262.1 + 62702 0.66 0.91698
Target:  5'- aGCGCGACGAUG-GGuaaucgcgcacGCAcccUGAUCgGCGc -3'
miRNA:   3'- -CGCGCUGCUGCaCU-----------CGU---ACUAGaUGC- -5'
24055 3' -51.7 NC_005262.1 + 57003 0.66 0.92883
Target:  5'- aGCGCGACGA-GUucucGGGCGcGAUCUuCa -3'
miRNA:   3'- -CGCGCUGCUgCA----CUCGUaCUAGAuGc -5'
24055 3' -51.7 NC_005262.1 + 34496 0.69 0.795315
Target:  5'- cGCGCGGCGGCGc--GCGacuUCUGCGa -3'
miRNA:   3'- -CGCGCUGCUGCacuCGUacuAGAUGC- -5'
24055 3' -51.7 NC_005262.1 + 34006 0.69 0.795315
Target:  5'- gGCGCgGACGGCGUGAcGCcgGGccgcaUCgUGCGc -3'
miRNA:   3'- -CGCG-CUGCUGCACU-CGuaCU-----AG-AUGC- -5'
24055 3' -51.7 NC_005262.1 + 56957 0.7 0.765348
Target:  5'- cGCGCgGGCGAguuCGcGGGCGUGGUCgGCa -3'
miRNA:   3'- -CGCG-CUGCU---GCaCUCGUACUAGaUGc -5'
24055 3' -51.7 NC_005262.1 + 47655 0.75 0.485273
Target:  5'- aGCGCGA-GGCGaucGAGCAggacaugaagcUGAUCUACGg -3'
miRNA:   3'- -CGCGCUgCUGCa--CUCGU-----------ACUAGAUGC- -5'
24055 3' -51.7 NC_005262.1 + 28578 0.74 0.505999
Target:  5'- cGCGCGACGGCaUGcccuacGGCGUGAUCcGCu -3'
miRNA:   3'- -CGCGCUGCUGcAC------UCGUACUAGaUGc -5'
24055 3' -51.7 NC_005262.1 + 26920 0.73 0.570193
Target:  5'- cGCGCGACGAUcccGAGCcgGAUUcGCGc -3'
miRNA:   3'- -CGCGCUGCUGca-CUCGuaCUAGaUGC- -5'
24055 3' -51.7 NC_005262.1 + 58793 0.73 0.599773
Target:  5'- gGCGCugggucGACGACGUGAucggcgccgugaagGCAUGGcugCUGCGg -3'
miRNA:   3'- -CGCG------CUGCUGCACU--------------CGUACUa--GAUGC- -5'
24055 3' -51.7 NC_005262.1 + 28300 0.72 0.636181
Target:  5'- uGCGCGcaaGCG-CGUGcGCAUGAUCgagGCa -3'
miRNA:   3'- -CGCGC---UGCuGCACuCGUACUAGa--UGc -5'
24055 3' -51.7 NC_005262.1 + 52908 0.72 0.647222
Target:  5'- -aGCGAgGGCGUGAuccGCucGAUCUACGa -3'
miRNA:   3'- cgCGCUgCUGCACU---CGuaCUAGAUGC- -5'
24055 3' -51.7 NC_005262.1 + 49666 0.71 0.680219
Target:  5'- -gGCGGCGGCaUGGGgAUGGUCgGCGg -3'
miRNA:   3'- cgCGCUGCUGcACUCgUACUAGaUGC- -5'
24055 3' -51.7 NC_005262.1 + 56607 0.71 0.69114
Target:  5'- cGCGCGugGGCGacgaaGGGCAg---CUACGa -3'
miRNA:   3'- -CGCGCugCUGCa----CUCGUacuaGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.