miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24055 5' -58.8 NC_005262.1 + 997 0.66 0.621049
Target:  5'- cCGCacGAUCuGCGCGGGUGGUGuaaaugUGCu -3'
miRNA:   3'- -GCGcaCUAG-CGCGCCCGCUACca----GCG- -5'
24055 5' -58.8 NC_005262.1 + 13449 0.66 0.617899
Target:  5'- cCGCGUGAagggUCGCaaGGGCGcgaagcccgcgcgcGUCGCg -3'
miRNA:   3'- -GCGCACU----AGCGcgCCCGCuac-----------CAGCG- -5'
24055 5' -58.8 NC_005262.1 + 43345 0.66 0.610553
Target:  5'- gGCGgcGAUCGaCGC-GGCGAaGG-CGCa -3'
miRNA:   3'- gCGCa-CUAGC-GCGcCCGCUaCCaGCG- -5'
24055 5' -58.8 NC_005262.1 + 13557 0.66 0.610553
Target:  5'- gCGCGcGAcgCGCGCGGGCu----UCGCg -3'
miRNA:   3'- -GCGCaCUa-GCGCGCCCGcuaccAGCG- -5'
24055 5' -58.8 NC_005262.1 + 59491 0.66 0.610553
Target:  5'- aGCGU---UGCGCGuGCGAU-GUCGCg -3'
miRNA:   3'- gCGCAcuaGCGCGCcCGCUAcCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 40751 0.66 0.600074
Target:  5'- aCGCuaug-CGCGUGGGUcg-GGUCGCu -3'
miRNA:   3'- -GCGcacuaGCGCGCCCGcuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 8932 0.66 0.589619
Target:  5'- aGCGcccgauuauuUGAcccUCGCGCGGGCGA----CGCa -3'
miRNA:   3'- gCGC----------ACU---AGCGCGCCCGCUaccaGCG- -5'
24055 5' -58.8 NC_005262.1 + 42148 0.66 0.589619
Target:  5'- aCGCGg---CGC-CGGGCcc-GGUCGCg -3'
miRNA:   3'- -GCGCacuaGCGcGCCCGcuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 53427 0.67 0.568816
Target:  5'- uCGCGcGGUCGgcgagguaGCGGcGCGcgcGGUCGCu -3'
miRNA:   3'- -GCGCaCUAGCg-------CGCC-CGCua-CCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 54288 0.67 0.568816
Target:  5'- gGC----UCGCGCGGGCGcUGGagcaCGCg -3'
miRNA:   3'- gCGcacuAGCGCGCCCGCuACCa---GCG- -5'
24055 5' -58.8 NC_005262.1 + 670 0.67 0.56778
Target:  5'- gCGCGUuAUCacgaugagcugaaGCGguUGGGCGAgcGGUCGCg -3'
miRNA:   3'- -GCGCAcUAG-------------CGC--GCCCGCUa-CCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 10914 0.67 0.558481
Target:  5'- gCGCGgcgGA-CGCGCauGCGcUGGUCGUg -3'
miRNA:   3'- -GCGCa--CUaGCGCGccCGCuACCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 39720 0.67 0.558481
Target:  5'- gGUGUGAUCGCGCagcaGGCGcag--CGCa -3'
miRNA:   3'- gCGCACUAGCGCGc---CCGCuaccaGCG- -5'
24055 5' -58.8 NC_005262.1 + 50196 0.67 0.55745
Target:  5'- aGCGcucggccggcuucUGuUCGCGCGGcGCGGguucGGUCGg -3'
miRNA:   3'- gCGC-------------ACuAGCGCGCC-CGCUa---CCAGCg -5'
24055 5' -58.8 NC_005262.1 + 5878 0.67 0.537978
Target:  5'- aCGCGUGcaugCGCGCGGcGCaaGAUGGcCu- -3'
miRNA:   3'- -GCGCACua--GCGCGCC-CG--CUACCaGcg -5'
24055 5' -58.8 NC_005262.1 + 20492 0.67 0.53696
Target:  5'- uGCGUaAUCGCGCGcaccaucGGCGcgGcGcUCGCg -3'
miRNA:   3'- gCGCAcUAGCGCGC-------CCGCuaC-C-AGCG- -5'
24055 5' -58.8 NC_005262.1 + 10970 0.67 0.527824
Target:  5'- uCGCGcUGucggCGCGcCGGGaaCGccGGUCGCg -3'
miRNA:   3'- -GCGC-ACua--GCGC-GCCC--GCuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 15899 0.67 0.527824
Target:  5'- cCGCGUGcgCGCGaCGuGGCgccgcGAUGcGcCGCa -3'
miRNA:   3'- -GCGCACuaGCGC-GC-CCG-----CUAC-CaGCG- -5'
24055 5' -58.8 NC_005262.1 + 62117 0.67 0.517741
Target:  5'- uCGaggaGgagGAUCGCGCGcGGCGAUGauaUUGCc -3'
miRNA:   3'- -GCg---Ca--CUAGCGCGC-CCGCUACc--AGCG- -5'
24055 5' -58.8 NC_005262.1 + 55019 0.68 0.507736
Target:  5'- uCGCGcacgcGGUCgGCGCGGGCaagacguucacGAUGaUCGCg -3'
miRNA:   3'- -GCGCa----CUAG-CGCGCCCG-----------CUACcAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.