miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24055 5' -58.8 NC_005262.1 + 43984 1.11 0.000487
Target:  5'- gCGCGUGAUCGCGCGGGCGAUGGUCGCu -3'
miRNA:   3'- -GCGCACUAGCGCGCCCGCUACCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 32635 0.77 0.133401
Target:  5'- aCGcCGUauggcGAUUGCGCGGGCGAUcaGGUCuGCg -3'
miRNA:   3'- -GC-GCA-----CUAGCGCGCCCGCUA--CCAG-CG- -5'
24055 5' -58.8 NC_005262.1 + 5161 0.76 0.16339
Target:  5'- gCGCGcUGAUCGgugacggccggcguCGCGGGCGcgGG-CGCg -3'
miRNA:   3'- -GCGC-ACUAGC--------------GCGCCCGCuaCCaGCG- -5'
24055 5' -58.8 NC_005262.1 + 19789 0.74 0.202377
Target:  5'- gCGCGUGGUCGuCGCacaucGGGC---GGUCGCa -3'
miRNA:   3'- -GCGCACUAGC-GCG-----CCCGcuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 56948 0.74 0.207586
Target:  5'- aCGCc-GAUcCGCGCGGGCGAguucgcgggcgUGGUCGg -3'
miRNA:   3'- -GCGcaCUA-GCGCGCCCGCU-----------ACCAGCg -5'
24055 5' -58.8 NC_005262.1 + 51196 0.74 0.21835
Target:  5'- gGCGgcccgcugGAgcCGCGCGGGCGAUGcugaUCGCa -3'
miRNA:   3'- gCGCa-------CUa-GCGCGCCCGCUACc---AGCG- -5'
24055 5' -58.8 NC_005262.1 + 23360 0.73 0.253527
Target:  5'- gGCGUGAagCGCGCGgcGGCGAaGGccCGCa -3'
miRNA:   3'- gCGCACUa-GCGCGC--CCGCUaCCa-GCG- -5'
24055 5' -58.8 NC_005262.1 + 44493 0.72 0.293231
Target:  5'- uCGUGUGcggCGCGCGGGUGGUaucccUCGCg -3'
miRNA:   3'- -GCGCACua-GCGCGCCCGCUAcc---AGCG- -5'
24055 5' -58.8 NC_005262.1 + 36230 0.72 0.293231
Target:  5'- aGCugGUcGAUCGCGCuGGCGGUGcUCGCc -3'
miRNA:   3'- gCG--CA-CUAGCGCGcCCGCUACcAGCG- -5'
24055 5' -58.8 NC_005262.1 + 60052 0.71 0.307504
Target:  5'- gCGCGccUGAUCGaGCGGGCGAaucUGcuUCGCg -3'
miRNA:   3'- -GCGC--ACUAGCgCGCCCGCU---ACc-AGCG- -5'
24055 5' -58.8 NC_005262.1 + 5715 0.71 0.322302
Target:  5'- --gGUGAUgCGCaacuCGGGCGA-GGUCGCg -3'
miRNA:   3'- gcgCACUA-GCGc---GCCCGCUaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 29751 0.71 0.345483
Target:  5'- gGCG-GGcUGCGCGGGCGcgGGcggcaugccgcUCGCu -3'
miRNA:   3'- gCGCaCUaGCGCGCCCGCuaCC-----------AGCG- -5'
24055 5' -58.8 NC_005262.1 + 48102 0.71 0.314837
Target:  5'- uGCGUGGUC---UGGGUGuUGGUCGCg -3'
miRNA:   3'- gCGCACUAGcgcGCCCGCuACCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 23164 0.71 0.329898
Target:  5'- uGCGUcGAUCcUGCGGGCGGguucGGuaUCGCg -3'
miRNA:   3'- gCGCA-CUAGcGCGCCCGCUa---CC--AGCG- -5'
24055 5' -58.8 NC_005262.1 + 36278 0.71 0.322302
Target:  5'- uGCGUGggCGCGCGGcgacGCGAacaccucGGUCGa -3'
miRNA:   3'- gCGCACuaGCGCGCC----CGCUa------CCAGCg -5'
24055 5' -58.8 NC_005262.1 + 46611 0.71 0.322302
Target:  5'- cCGCGcUGGgcugcUGCGCGGGCaGggGcGUCGCg -3'
miRNA:   3'- -GCGC-ACUa----GCGCGCCCG-CuaC-CAGCG- -5'
24055 5' -58.8 NC_005262.1 + 8210 0.7 0.386712
Target:  5'- aGCGaUGAUcCGCGCGGGCcAUGagcuGUCGg -3'
miRNA:   3'- gCGC-ACUA-GCGCGCCCGcUAC----CAGCg -5'
24055 5' -58.8 NC_005262.1 + 46653 0.7 0.395338
Target:  5'- gCGuCGUGGUCGuCGUGGGCG----UCGCg -3'
miRNA:   3'- -GC-GCACUAGC-GCGCCCGCuaccAGCG- -5'
24055 5' -58.8 NC_005262.1 + 11541 0.7 0.353471
Target:  5'- aGCGcGGUaggcacgaUGCGCGGGCGcgGcguGUCGCg -3'
miRNA:   3'- gCGCaCUA--------GCGCGCCCGCuaC---CAGCG- -5'
24055 5' -58.8 NC_005262.1 + 48481 0.69 0.440276
Target:  5'- cCGCGUGGgcaCGgGCGGcGCGAcGGcagcCGCa -3'
miRNA:   3'- -GCGCACUa--GCgCGCC-CGCUaCCa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.