miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24055 5' -58.8 NC_005262.1 + 44780 0.69 0.450547
Target:  5'- gCGCGgcgaugccacguucgGAUCggGCGCGGGCGc--GUCGCc -3'
miRNA:   3'- -GCGCa--------------CUAG--CGCGCCCGCuacCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 9248 0.69 0.412958
Target:  5'- uGCGUGAagGCGcCGGGUGAUc--CGCa -3'
miRNA:   3'- gCGCACUagCGC-GCCCGCUAccaGCG- -5'
24055 5' -58.8 NC_005262.1 + 33012 0.69 0.421948
Target:  5'- -uCGUGAagGCGCuGGCGAgcGUCGCg -3'
miRNA:   3'- gcGCACUagCGCGcCCGCUacCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 47757 0.69 0.412958
Target:  5'- cCGCGgcgaacccgGcAUCGCGCGGGCuccccgugcucGAUaccaagacaGGUCGCa -3'
miRNA:   3'- -GCGCa--------C-UAGCGCGCCCG-----------CUA---------CCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 61149 0.69 0.431055
Target:  5'- gGCGcagcaGAUCGCggcgGCGGGCGAgcugacgGG-CGCg -3'
miRNA:   3'- gCGCa----CUAGCG----CGCCCGCUa------CCaGCG- -5'
24055 5' -58.8 NC_005262.1 + 48481 0.69 0.440276
Target:  5'- cCGCGUGGgcaCGgGCGGcGCGAcGGcagcCGCa -3'
miRNA:   3'- -GCGCACUa--GCgCGCC-CGCUaCCa---GCG- -5'
24055 5' -58.8 NC_005262.1 + 1924 0.69 0.449608
Target:  5'- uGCG-GGUUGCGUGGcuCGcUGGUCGUa -3'
miRNA:   3'- gCGCaCUAGCGCGCCc-GCuACCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 46711 0.69 0.431055
Target:  5'- aGCGUGcccuucAUCGCGuCGGGCGGgaucuGUgGCg -3'
miRNA:   3'- gCGCAC------UAGCGC-GCCCGCUac---CAgCG- -5'
24055 5' -58.8 NC_005262.1 + 48169 0.68 0.507736
Target:  5'- gCGCGUcGG-CGC-CGGGCGGcucGUCGCg -3'
miRNA:   3'- -GCGCA-CUaGCGcGCCCGCUac-CAGCG- -5'
24055 5' -58.8 NC_005262.1 + 27060 0.68 0.456205
Target:  5'- gGCGUGAgcgaugccauuucuUCGUcgGuCGGGauGUGGUCGCg -3'
miRNA:   3'- gCGCACU--------------AGCG--C-GCCCgcUACCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 11876 0.68 0.478238
Target:  5'- gCGaCGUGuAUCGCGCGaaaGGUGGcCGCg -3'
miRNA:   3'- -GC-GCAC-UAGCGCGCccgCUACCaGCG- -5'
24055 5' -58.8 NC_005262.1 + 55019 0.68 0.507736
Target:  5'- uCGCGcacgcGGUCgGCGCGGGCaagacguucacGAUGaUCGCg -3'
miRNA:   3'- -GCGCa----CUAG-CGCGCCCG-----------CUACcAGCG- -5'
24055 5' -58.8 NC_005262.1 + 23648 0.68 0.459048
Target:  5'- uGCGcccGcgCGCgGCGGGCGGuUGGUCa- -3'
miRNA:   3'- gCGCa--CuaGCG-CGCCCGCU-ACCAGcg -5'
24055 5' -58.8 NC_005262.1 + 23410 0.68 0.459048
Target:  5'- gCGCGUGcUCGUGCGcGGCGccuUGaugCGCu -3'
miRNA:   3'- -GCGCACuAGCGCGC-CCGCu--ACca-GCG- -5'
24055 5' -58.8 NC_005262.1 + 62978 0.68 0.507736
Target:  5'- uCGuCG-GcgCGCugGCGGGUGAUGGugUCGCc -3'
miRNA:   3'- -GC-GCaCuaGCG--CGCCCGCUACC--AGCG- -5'
24055 5' -58.8 NC_005262.1 + 54288 0.67 0.568816
Target:  5'- gGC----UCGCGCGGGCGcUGGagcaCGCg -3'
miRNA:   3'- gCGcacuAGCGCGCCCGCuACCa---GCG- -5'
24055 5' -58.8 NC_005262.1 + 15899 0.67 0.527824
Target:  5'- cCGCGUGcgCGCGaCGuGGCgccgcGAUGcGcCGCa -3'
miRNA:   3'- -GCGCACuaGCGC-GC-CCG-----CUAC-CaGCG- -5'
24055 5' -58.8 NC_005262.1 + 10970 0.67 0.527824
Target:  5'- uCGCGcUGucggCGCGcCGGGaaCGccGGUCGCg -3'
miRNA:   3'- -GCGC-ACua--GCGC-GCCC--GCuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 670 0.67 0.56778
Target:  5'- gCGCGUuAUCacgaugagcugaaGCGguUGGGCGAgcGGUCGCg -3'
miRNA:   3'- -GCGCAcUAG-------------CGC--GCCCGCUa-CCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 53427 0.67 0.568816
Target:  5'- uCGCGcGGUCGgcgagguaGCGGcGCGcgcGGUCGCu -3'
miRNA:   3'- -GCGCaCUAGCg-------CGCC-CGCua-CCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.