Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24055 | 5' | -58.8 | NC_005262.1 | + | 62978 | 0.68 | 0.507736 |
Target: 5'- uCGuCG-GcgCGCugGCGGGUGAUGGugUCGCc -3' miRNA: 3'- -GC-GCaCuaGCG--CGCCCGCUACC--AGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 55019 | 0.68 | 0.507736 |
Target: 5'- uCGCGcacgcGGUCgGCGCGGGCaagacguucacGAUGaUCGCg -3' miRNA: 3'- -GCGCa----CUAG-CGCGCCCG-----------CUACcAGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 11876 | 0.68 | 0.478238 |
Target: 5'- gCGaCGUGuAUCGCGCGaaaGGUGGcCGCg -3' miRNA: 3'- -GC-GCAC-UAGCGCGCccgCUACCaGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 23648 | 0.68 | 0.459048 |
Target: 5'- uGCGcccGcgCGCgGCGGGCGGuUGGUCa- -3' miRNA: 3'- gCGCa--CuaGCG-CGCCCGCU-ACCAGcg -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 23410 | 0.68 | 0.459048 |
Target: 5'- gCGCGUGcUCGUGCGcGGCGccuUGaugCGCu -3' miRNA: 3'- -GCGCACuAGCGCGC-CCGCu--ACca-GCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 27060 | 0.68 | 0.456205 |
Target: 5'- gGCGUGAgcgaugccauuucuUCGUcgGuCGGGauGUGGUCGCg -3' miRNA: 3'- gCGCACU--------------AGCG--C-GCCCgcUACCAGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 44780 | 0.69 | 0.450547 |
Target: 5'- gCGCGgcgaugccacguucgGAUCggGCGCGGGCGc--GUCGCc -3' miRNA: 3'- -GCGCa--------------CUAG--CGCGCCCGCuacCAGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 38513 | 0.69 | 0.449608 |
Target: 5'- gGCGUGAUcucgacCGCGCcGGCcugGAUGGugUCGCc -3' miRNA: 3'- gCGCACUA------GCGCGcCCG---CUACC--AGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 1924 | 0.69 | 0.449608 |
Target: 5'- uGCG-GGUUGCGUGGcuCGcUGGUCGUa -3' miRNA: 3'- gCGCaCUAGCGCGCCc-GCuACCAGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 48481 | 0.69 | 0.440276 |
Target: 5'- cCGCGUGGgcaCGgGCGGcGCGAcGGcagcCGCa -3' miRNA: 3'- -GCGCACUa--GCgCGCC-CGCUaCCa---GCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 46711 | 0.69 | 0.431055 |
Target: 5'- aGCGUGcccuucAUCGCGuCGGGCGGgaucuGUgGCg -3' miRNA: 3'- gCGCAC------UAGCGC-GCCCGCUac---CAgCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 61149 | 0.69 | 0.431055 |
Target: 5'- gGCGcagcaGAUCGCggcgGCGGGCGAgcugacgGG-CGCg -3' miRNA: 3'- gCGCa----CUAGCG----CGCCCGCUa------CCaGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 33012 | 0.69 | 0.421948 |
Target: 5'- -uCGUGAagGCGCuGGCGAgcGUCGCg -3' miRNA: 3'- gcGCACUagCGCGcCCGCUacCAGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 47757 | 0.69 | 0.412958 |
Target: 5'- cCGCGgcgaacccgGcAUCGCGCGGGCuccccgugcucGAUaccaagacaGGUCGCa -3' miRNA: 3'- -GCGCa--------C-UAGCGCGCCCG-----------CUA---------CCAGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 9248 | 0.69 | 0.412958 |
Target: 5'- uGCGUGAagGCGcCGGGUGAUc--CGCa -3' miRNA: 3'- gCGCACUagCGC-GCCCGCUAccaGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 46653 | 0.7 | 0.395338 |
Target: 5'- gCGuCGUGGUCGuCGUGGGCG----UCGCg -3' miRNA: 3'- -GC-GCACUAGC-GCGCCCGCuaccAGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 8210 | 0.7 | 0.386712 |
Target: 5'- aGCGaUGAUcCGCGCGGGCcAUGagcuGUCGg -3' miRNA: 3'- gCGC-ACUA-GCGCGCCCGcUAC----CAGCg -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 11541 | 0.7 | 0.353471 |
Target: 5'- aGCGcGGUaggcacgaUGCGCGGGCGcgGcguGUCGCg -3' miRNA: 3'- gCGCaCUA--------GCGCGCCCGCuaC---CAGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 29751 | 0.71 | 0.345483 |
Target: 5'- gGCG-GGcUGCGCGGGCGcgGGcggcaugccgcUCGCu -3' miRNA: 3'- gCGCaCUaGCGCGCCCGCuaCC-----------AGCG- -5' |
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24055 | 5' | -58.8 | NC_005262.1 | + | 23164 | 0.71 | 0.329898 |
Target: 5'- uGCGUcGAUCcUGCGGGCGGguucGGuaUCGCg -3' miRNA: 3'- gCGCA-CUAGcGCGCCCGCUa---CC--AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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