miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24055 5' -58.8 NC_005262.1 + 670 0.67 0.56778
Target:  5'- gCGCGUuAUCacgaugagcugaaGCGguUGGGCGAgcGGUCGCg -3'
miRNA:   3'- -GCGCAcUAG-------------CGC--GCCCGCUa-CCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 997 0.66 0.621049
Target:  5'- cCGCacGAUCuGCGCGGGUGGUGuaaaugUGCu -3'
miRNA:   3'- -GCGcaCUAG-CGCGCCCGCUACca----GCG- -5'
24055 5' -58.8 NC_005262.1 + 1924 0.69 0.449608
Target:  5'- uGCG-GGUUGCGUGGcuCGcUGGUCGUa -3'
miRNA:   3'- gCGCaCUAGCGCGCCc-GCuACCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 5161 0.76 0.16339
Target:  5'- gCGCGcUGAUCGgugacggccggcguCGCGGGCGcgGG-CGCg -3'
miRNA:   3'- -GCGC-ACUAGC--------------GCGCCCGCuaCCaGCG- -5'
24055 5' -58.8 NC_005262.1 + 5715 0.71 0.322302
Target:  5'- --gGUGAUgCGCaacuCGGGCGA-GGUCGCg -3'
miRNA:   3'- gcgCACUA-GCGc---GCCCGCUaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 5878 0.67 0.537978
Target:  5'- aCGCGUGcaugCGCGCGGcGCaaGAUGGcCu- -3'
miRNA:   3'- -GCGCACua--GCGCGCC-CG--CUACCaGcg -5'
24055 5' -58.8 NC_005262.1 + 8210 0.7 0.386712
Target:  5'- aGCGaUGAUcCGCGCGGGCcAUGagcuGUCGg -3'
miRNA:   3'- gCGC-ACUA-GCGCGCCCGcUAC----CAGCg -5'
24055 5' -58.8 NC_005262.1 + 8932 0.66 0.589619
Target:  5'- aGCGcccgauuauuUGAcccUCGCGCGGGCGA----CGCa -3'
miRNA:   3'- gCGC----------ACU---AGCGCGCCCGCUaccaGCG- -5'
24055 5' -58.8 NC_005262.1 + 9248 0.69 0.412958
Target:  5'- uGCGUGAagGCGcCGGGUGAUc--CGCa -3'
miRNA:   3'- gCGCACUagCGC-GCCCGCUAccaGCG- -5'
24055 5' -58.8 NC_005262.1 + 10914 0.67 0.558481
Target:  5'- gCGCGgcgGA-CGCGCauGCGcUGGUCGUg -3'
miRNA:   3'- -GCGCa--CUaGCGCGccCGCuACCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 10970 0.67 0.527824
Target:  5'- uCGCGcUGucggCGCGcCGGGaaCGccGGUCGCg -3'
miRNA:   3'- -GCGC-ACua--GCGC-GCCC--GCuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 11541 0.7 0.353471
Target:  5'- aGCGcGGUaggcacgaUGCGCGGGCGcgGcguGUCGCg -3'
miRNA:   3'- gCGCaCUA--------GCGCGCCCGCuaC---CAGCG- -5'
24055 5' -58.8 NC_005262.1 + 11876 0.68 0.478238
Target:  5'- gCGaCGUGuAUCGCGCGaaaGGUGGcCGCg -3'
miRNA:   3'- -GC-GCAC-UAGCGCGCccgCUACCaGCG- -5'
24055 5' -58.8 NC_005262.1 + 13449 0.66 0.617899
Target:  5'- cCGCGUGAagggUCGCaaGGGCGcgaagcccgcgcgcGUCGCg -3'
miRNA:   3'- -GCGCACU----AGCGcgCCCGCuac-----------CAGCG- -5'
24055 5' -58.8 NC_005262.1 + 13557 0.66 0.610553
Target:  5'- gCGCGcGAcgCGCGCGGGCu----UCGCg -3'
miRNA:   3'- -GCGCaCUa-GCGCGCCCGcuaccAGCG- -5'
24055 5' -58.8 NC_005262.1 + 15899 0.67 0.527824
Target:  5'- cCGCGUGcgCGCGaCGuGGCgccgcGAUGcGcCGCa -3'
miRNA:   3'- -GCGCACuaGCGC-GC-CCG-----CUAC-CaGCG- -5'
24055 5' -58.8 NC_005262.1 + 19789 0.74 0.202377
Target:  5'- gCGCGUGGUCGuCGCacaucGGGC---GGUCGCa -3'
miRNA:   3'- -GCGCACUAGC-GCG-----CCCGcuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 20492 0.67 0.53696
Target:  5'- uGCGUaAUCGCGCGcaccaucGGCGcgGcGcUCGCg -3'
miRNA:   3'- gCGCAcUAGCGCGC-------CCGCuaC-C-AGCG- -5'
24055 5' -58.8 NC_005262.1 + 23164 0.71 0.329898
Target:  5'- uGCGUcGAUCcUGCGGGCGGguucGGuaUCGCg -3'
miRNA:   3'- gCGCA-CUAGcGCGCCCGCUa---CC--AGCG- -5'
24055 5' -58.8 NC_005262.1 + 23360 0.73 0.253527
Target:  5'- gGCGUGAagCGCGCGgcGGCGAaGGccCGCa -3'
miRNA:   3'- gCGCACUa-GCGCGC--CCGCUaCCa-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.