miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24055 5' -58.8 NC_005262.1 + 48102 0.71 0.314837
Target:  5'- uGCGUGGUC---UGGGUGuUGGUCGCg -3'
miRNA:   3'- gCGCACUAGcgcGCCCGCuACCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 48169 0.68 0.507736
Target:  5'- gCGCGUcGG-CGC-CGGGCGGcucGUCGCg -3'
miRNA:   3'- -GCGCA-CUaGCGcGCCCGCUac-CAGCG- -5'
24055 5' -58.8 NC_005262.1 + 48481 0.69 0.440276
Target:  5'- cCGCGUGGgcaCGgGCGGcGCGAcGGcagcCGCa -3'
miRNA:   3'- -GCGCACUa--GCgCGCC-CGCUaCCa---GCG- -5'
24055 5' -58.8 NC_005262.1 + 50196 0.67 0.55745
Target:  5'- aGCGcucggccggcuucUGuUCGCGCGGcGCGGguucGGUCGg -3'
miRNA:   3'- gCGC-------------ACuAGCGCGCC-CGCUa---CCAGCg -5'
24055 5' -58.8 NC_005262.1 + 51196 0.74 0.21835
Target:  5'- gGCGgcccgcugGAgcCGCGCGGGCGAUGcugaUCGCa -3'
miRNA:   3'- gCGCa-------CUa-GCGCGCCCGCUACc---AGCG- -5'
24055 5' -58.8 NC_005262.1 + 53427 0.67 0.568816
Target:  5'- uCGCGcGGUCGgcgagguaGCGGcGCGcgcGGUCGCu -3'
miRNA:   3'- -GCGCaCUAGCg-------CGCC-CGCua-CCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 54288 0.67 0.568816
Target:  5'- gGC----UCGCGCGGGCGcUGGagcaCGCg -3'
miRNA:   3'- gCGcacuAGCGCGCCCGCuACCa---GCG- -5'
24055 5' -58.8 NC_005262.1 + 55019 0.68 0.507736
Target:  5'- uCGCGcacgcGGUCgGCGCGGGCaagacguucacGAUGaUCGCg -3'
miRNA:   3'- -GCGCa----CUAG-CGCGCCCG-----------CUACcAGCG- -5'
24055 5' -58.8 NC_005262.1 + 56948 0.74 0.207586
Target:  5'- aCGCc-GAUcCGCGCGGGCGAguucgcgggcgUGGUCGg -3'
miRNA:   3'- -GCGcaCUA-GCGCGCCCGCU-----------ACCAGCg -5'
24055 5' -58.8 NC_005262.1 + 59491 0.66 0.610553
Target:  5'- aGCGU---UGCGCGuGCGAU-GUCGCg -3'
miRNA:   3'- gCGCAcuaGCGCGCcCGCUAcCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 60052 0.71 0.307504
Target:  5'- gCGCGccUGAUCGaGCGGGCGAaucUGcuUCGCg -3'
miRNA:   3'- -GCGC--ACUAGCgCGCCCGCU---ACc-AGCG- -5'
24055 5' -58.8 NC_005262.1 + 61149 0.69 0.431055
Target:  5'- gGCGcagcaGAUCGCggcgGCGGGCGAgcugacgGG-CGCg -3'
miRNA:   3'- gCGCa----CUAGCG----CGCCCGCUa------CCaGCG- -5'
24055 5' -58.8 NC_005262.1 + 62117 0.67 0.517741
Target:  5'- uCGaggaGgagGAUCGCGCGcGGCGAUGauaUUGCc -3'
miRNA:   3'- -GCg---Ca--CUAGCGCGC-CCGCUACc--AGCG- -5'
24055 5' -58.8 NC_005262.1 + 62978 0.68 0.507736
Target:  5'- uCGuCG-GcgCGCugGCGGGUGAUGGugUCGCc -3'
miRNA:   3'- -GC-GCaCuaGCG--CGCCCGCUACC--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.