miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24055 5' -58.8 NC_005262.1 + 43984 1.11 0.000487
Target:  5'- gCGCGUGAUCGCGCGGGCGAUGGUCGCu -3'
miRNA:   3'- -GCGCACUAGCGCGCCCGCUACCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 43345 0.66 0.610553
Target:  5'- gGCGgcGAUCGaCGC-GGCGAaGG-CGCa -3'
miRNA:   3'- gCGCa-CUAGC-GCGcCCGCUaCCaGCG- -5'
24055 5' -58.8 NC_005262.1 + 42148 0.66 0.589619
Target:  5'- aCGCGg---CGC-CGGGCcc-GGUCGCg -3'
miRNA:   3'- -GCGCacuaGCGcGCCCGcuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 40751 0.66 0.600074
Target:  5'- aCGCuaug-CGCGUGGGUcg-GGUCGCu -3'
miRNA:   3'- -GCGcacuaGCGCGCCCGcuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 39720 0.67 0.558481
Target:  5'- gGUGUGAUCGCGCagcaGGCGcag--CGCa -3'
miRNA:   3'- gCGCACUAGCGCGc---CCGCuaccaGCG- -5'
24055 5' -58.8 NC_005262.1 + 38513 0.69 0.449608
Target:  5'- gGCGUGAUcucgacCGCGCcGGCcugGAUGGugUCGCc -3'
miRNA:   3'- gCGCACUA------GCGCGcCCG---CUACC--AGCG- -5'
24055 5' -58.8 NC_005262.1 + 36278 0.71 0.322302
Target:  5'- uGCGUGggCGCGCGGcgacGCGAacaccucGGUCGa -3'
miRNA:   3'- gCGCACuaGCGCGCC----CGCUa------CCAGCg -5'
24055 5' -58.8 NC_005262.1 + 36230 0.72 0.293231
Target:  5'- aGCugGUcGAUCGCGCuGGCGGUGcUCGCc -3'
miRNA:   3'- gCG--CA-CUAGCGCGcCCGCUACcAGCG- -5'
24055 5' -58.8 NC_005262.1 + 33012 0.69 0.421948
Target:  5'- -uCGUGAagGCGCuGGCGAgcGUCGCg -3'
miRNA:   3'- gcGCACUagCGCGcCCGCUacCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 32635 0.77 0.133401
Target:  5'- aCGcCGUauggcGAUUGCGCGGGCGAUcaGGUCuGCg -3'
miRNA:   3'- -GC-GCA-----CUAGCGCGCCCGCUA--CCAG-CG- -5'
24055 5' -58.8 NC_005262.1 + 29751 0.71 0.345483
Target:  5'- gGCG-GGcUGCGCGGGCGcgGGcggcaugccgcUCGCu -3'
miRNA:   3'- gCGCaCUaGCGCGCCCGCuaCC-----------AGCG- -5'
24055 5' -58.8 NC_005262.1 + 27060 0.68 0.456205
Target:  5'- gGCGUGAgcgaugccauuucuUCGUcgGuCGGGauGUGGUCGCg -3'
miRNA:   3'- gCGCACU--------------AGCG--C-GCCCgcUACCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 23648 0.68 0.459048
Target:  5'- uGCGcccGcgCGCgGCGGGCGGuUGGUCa- -3'
miRNA:   3'- gCGCa--CuaGCG-CGCCCGCU-ACCAGcg -5'
24055 5' -58.8 NC_005262.1 + 23410 0.68 0.459048
Target:  5'- gCGCGUGcUCGUGCGcGGCGccuUGaugCGCu -3'
miRNA:   3'- -GCGCACuAGCGCGC-CCGCu--ACca-GCG- -5'
24055 5' -58.8 NC_005262.1 + 23360 0.73 0.253527
Target:  5'- gGCGUGAagCGCGCGgcGGCGAaGGccCGCa -3'
miRNA:   3'- gCGCACUa-GCGCGC--CCGCUaCCa-GCG- -5'
24055 5' -58.8 NC_005262.1 + 23164 0.71 0.329898
Target:  5'- uGCGUcGAUCcUGCGGGCGGguucGGuaUCGCg -3'
miRNA:   3'- gCGCA-CUAGcGCGCCCGCUa---CC--AGCG- -5'
24055 5' -58.8 NC_005262.1 + 20492 0.67 0.53696
Target:  5'- uGCGUaAUCGCGCGcaccaucGGCGcgGcGcUCGCg -3'
miRNA:   3'- gCGCAcUAGCGCGC-------CCGCuaC-C-AGCG- -5'
24055 5' -58.8 NC_005262.1 + 19789 0.74 0.202377
Target:  5'- gCGCGUGGUCGuCGCacaucGGGC---GGUCGCa -3'
miRNA:   3'- -GCGCACUAGC-GCG-----CCCGcuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 15899 0.67 0.527824
Target:  5'- cCGCGUGcgCGCGaCGuGGCgccgcGAUGcGcCGCa -3'
miRNA:   3'- -GCGCACuaGCGC-GC-CCG-----CUAC-CaGCG- -5'
24055 5' -58.8 NC_005262.1 + 13557 0.66 0.610553
Target:  5'- gCGCGcGAcgCGCGCGGGCu----UCGCg -3'
miRNA:   3'- -GCGCaCUa-GCGCGCCCGcuaccAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.