miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24055 5' -58.8 NC_005262.1 + 42148 0.66 0.589619
Target:  5'- aCGCGg---CGC-CGGGCcc-GGUCGCg -3'
miRNA:   3'- -GCGCacuaGCGcGCCCGcuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 1924 0.69 0.449608
Target:  5'- uGCG-GGUUGCGUGGcuCGcUGGUCGUa -3'
miRNA:   3'- gCGCaCUAGCGCGCCc-GCuACCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 11876 0.68 0.478238
Target:  5'- gCGaCGUGuAUCGCGCGaaaGGUGGcCGCg -3'
miRNA:   3'- -GC-GCAC-UAGCGCGCccgCUACCaGCG- -5'
24055 5' -58.8 NC_005262.1 + 55019 0.68 0.507736
Target:  5'- uCGCGcacgcGGUCgGCGCGGGCaagacguucacGAUGaUCGCg -3'
miRNA:   3'- -GCGCa----CUAG-CGCGCCCG-----------CUACcAGCG- -5'
24055 5' -58.8 NC_005262.1 + 10970 0.67 0.527824
Target:  5'- uCGCGcUGucggCGCGcCGGGaaCGccGGUCGCg -3'
miRNA:   3'- -GCGC-ACua--GCGC-GCCC--GCuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 15899 0.67 0.527824
Target:  5'- cCGCGUGcgCGCGaCGuGGCgccgcGAUGcGcCGCa -3'
miRNA:   3'- -GCGCACuaGCGC-GC-CCG-----CUAC-CaGCG- -5'
24055 5' -58.8 NC_005262.1 + 20492 0.67 0.53696
Target:  5'- uGCGUaAUCGCGCGcaccaucGGCGcgGcGcUCGCg -3'
miRNA:   3'- gCGCAcUAGCGCGC-------CCGCuaC-C-AGCG- -5'
24055 5' -58.8 NC_005262.1 + 39720 0.67 0.558481
Target:  5'- gGUGUGAUCGCGCagcaGGCGcag--CGCa -3'
miRNA:   3'- gCGCACUAGCGCGc---CCGCuaccaGCG- -5'
24055 5' -58.8 NC_005262.1 + 8932 0.66 0.589619
Target:  5'- aGCGcccgauuauuUGAcccUCGCGCGGGCGA----CGCa -3'
miRNA:   3'- gCGC----------ACU---AGCGCGCCCGCUaccaGCG- -5'
24055 5' -58.8 NC_005262.1 + 48481 0.69 0.440276
Target:  5'- cCGCGUGGgcaCGgGCGGcGCGAcGGcagcCGCa -3'
miRNA:   3'- -GCGCACUa--GCgCGCC-CGCUaCCa---GCG- -5'
24055 5' -58.8 NC_005262.1 + 61149 0.69 0.431055
Target:  5'- gGCGcagcaGAUCGCggcgGCGGGCGAgcugacgGG-CGCg -3'
miRNA:   3'- gCGCa----CUAGCG----CGCCCGCUa------CCaGCG- -5'
24055 5' -58.8 NC_005262.1 + 47757 0.69 0.412958
Target:  5'- cCGCGgcgaacccgGcAUCGCGCGGGCuccccgugcucGAUaccaagacaGGUCGCa -3'
miRNA:   3'- -GCGCa--------C-UAGCGCGCCCG-----------CUA---------CCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 32635 0.77 0.133401
Target:  5'- aCGcCGUauggcGAUUGCGCGGGCGAUcaGGUCuGCg -3'
miRNA:   3'- -GC-GCA-----CUAGCGCGCCCGCUA--CCAG-CG- -5'
24055 5' -58.8 NC_005262.1 + 5161 0.76 0.16339
Target:  5'- gCGCGcUGAUCGgugacggccggcguCGCGGGCGcgGG-CGCg -3'
miRNA:   3'- -GCGC-ACUAGC--------------GCGCCCGCuaCCaGCG- -5'
24055 5' -58.8 NC_005262.1 + 19789 0.74 0.202377
Target:  5'- gCGCGUGGUCGuCGCacaucGGGC---GGUCGCa -3'
miRNA:   3'- -GCGCACUAGC-GCG-----CCCGcuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 56948 0.74 0.207586
Target:  5'- aCGCc-GAUcCGCGCGGGCGAguucgcgggcgUGGUCGg -3'
miRNA:   3'- -GCGcaCUA-GCGCGCCCGCU-----------ACCAGCg -5'
24055 5' -58.8 NC_005262.1 + 51196 0.74 0.21835
Target:  5'- gGCGgcccgcugGAgcCGCGCGGGCGAUGcugaUCGCa -3'
miRNA:   3'- gCGCa-------CUa-GCGCGCCCGCUACc---AGCG- -5'
24055 5' -58.8 NC_005262.1 + 23360 0.73 0.253527
Target:  5'- gGCGUGAagCGCGCGgcGGCGAaGGccCGCa -3'
miRNA:   3'- gCGCACUa-GCGCGC--CCGCUaCCa-GCG- -5'
24055 5' -58.8 NC_005262.1 + 36278 0.71 0.322302
Target:  5'- uGCGUGggCGCGCGGcgacGCGAacaccucGGUCGa -3'
miRNA:   3'- gCGCACuaGCGCGCC----CGCUa------CCAGCg -5'
24055 5' -58.8 NC_005262.1 + 8210 0.7 0.386712
Target:  5'- aGCGaUGAUcCGCGCGGGCcAUGagcuGUCGg -3'
miRNA:   3'- gCGC-ACUA-GCGCGCCCGcUAC----CAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.