miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24055 5' -58.8 NC_005262.1 + 997 0.66 0.621049
Target:  5'- cCGCacGAUCuGCGCGGGUGGUGuaaaugUGCu -3'
miRNA:   3'- -GCGcaCUAG-CGCGCCCGCUACca----GCG- -5'
24055 5' -58.8 NC_005262.1 + 38513 0.69 0.449608
Target:  5'- gGCGUGAUcucgacCGCGCcGGCcugGAUGGugUCGCc -3'
miRNA:   3'- gCGCACUA------GCGCGcCCG---CUACC--AGCG- -5'
24055 5' -58.8 NC_005262.1 + 33012 0.69 0.421948
Target:  5'- -uCGUGAagGCGCuGGCGAgcGUCGCg -3'
miRNA:   3'- gcGCACUagCGCGcCCGCUacCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 36230 0.72 0.293231
Target:  5'- aGCugGUcGAUCGCGCuGGCGGUGcUCGCc -3'
miRNA:   3'- gCG--CA-CUAGCGCGcCCGCUACcAGCG- -5'
24055 5' -58.8 NC_005262.1 + 54288 0.67 0.568816
Target:  5'- gGC----UCGCGCGGGCGcUGGagcaCGCg -3'
miRNA:   3'- gCGcacuAGCGCGCCCGCuACCa---GCG- -5'
24055 5' -58.8 NC_005262.1 + 53427 0.67 0.568816
Target:  5'- uCGCGcGGUCGgcgagguaGCGGcGCGcgcGGUCGCu -3'
miRNA:   3'- -GCGCaCUAGCg-------CGCC-CGCua-CCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 10914 0.67 0.558481
Target:  5'- gCGCGgcgGA-CGCGCauGCGcUGGUCGUg -3'
miRNA:   3'- -GCGCa--CUaGCGCGccCGCuACCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 50196 0.67 0.55745
Target:  5'- aGCGcucggccggcuucUGuUCGCGCGGcGCGGguucGGUCGg -3'
miRNA:   3'- gCGC-------------ACuAGCGCGCC-CGCUa---CCAGCg -5'
24055 5' -58.8 NC_005262.1 + 48169 0.68 0.507736
Target:  5'- gCGCGUcGG-CGC-CGGGCGGcucGUCGCg -3'
miRNA:   3'- -GCGCA-CUaGCGcGCCCGCUac-CAGCG- -5'
24055 5' -58.8 NC_005262.1 + 44780 0.69 0.450547
Target:  5'- gCGCGgcgaugccacguucgGAUCggGCGCGGGCGc--GUCGCc -3'
miRNA:   3'- -GCGCa--------------CUAG--CGCGCCCGCuacCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 23410 0.68 0.459048
Target:  5'- gCGCGUGcUCGUGCGcGGCGccuUGaugCGCu -3'
miRNA:   3'- -GCGCACuAGCGCGC-CCGCu--ACca-GCG- -5'
24055 5' -58.8 NC_005262.1 + 62117 0.67 0.517741
Target:  5'- uCGaggaGgagGAUCGCGCGcGGCGAUGauaUUGCc -3'
miRNA:   3'- -GCg---Ca--CUAGCGCGC-CCGCUACc--AGCG- -5'
24055 5' -58.8 NC_005262.1 + 13557 0.66 0.610553
Target:  5'- gCGCGcGAcgCGCGCGGGCu----UCGCg -3'
miRNA:   3'- -GCGCaCUa-GCGCGCCCGcuaccAGCG- -5'
24055 5' -58.8 NC_005262.1 + 23648 0.68 0.459048
Target:  5'- uGCGcccGcgCGCgGCGGGCGGuUGGUCa- -3'
miRNA:   3'- gCGCa--CuaGCG-CGCCCGCU-ACCAGcg -5'
24055 5' -58.8 NC_005262.1 + 59491 0.66 0.610553
Target:  5'- aGCGU---UGCGCGuGCGAU-GUCGCg -3'
miRNA:   3'- gCGCAcuaGCGCGCcCGCUAcCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 5878 0.67 0.537978
Target:  5'- aCGCGUGcaugCGCGCGGcGCaaGAUGGcCu- -3'
miRNA:   3'- -GCGCACua--GCGCGCC-CG--CUACCaGcg -5'
24055 5' -58.8 NC_005262.1 + 27060 0.68 0.456205
Target:  5'- gGCGUGAgcgaugccauuucuUCGUcgGuCGGGauGUGGUCGCg -3'
miRNA:   3'- gCGCACU--------------AGCG--C-GCCCgcUACCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 46711 0.69 0.431055
Target:  5'- aGCGUGcccuucAUCGCGuCGGGCGGgaucuGUgGCg -3'
miRNA:   3'- gCGCAC------UAGCGC-GCCCGCUac---CAgCG- -5'
24055 5' -58.8 NC_005262.1 + 40751 0.66 0.600074
Target:  5'- aCGCuaug-CGCGUGGGUcg-GGUCGCu -3'
miRNA:   3'- -GCGcacuaGCGCGCCCGcuaCCAGCG- -5'
24055 5' -58.8 NC_005262.1 + 670 0.67 0.56778
Target:  5'- gCGCGUuAUCacgaugagcugaaGCGguUGGGCGAgcGGUCGCg -3'
miRNA:   3'- -GCGCAcUAG-------------CGC--GCCCGCUa-CCAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.