miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24056 3' -50.7 NC_005262.1 + 60834 0.66 0.964749
Target:  5'- -cGCCGGCcuacgcGAUCggcgugGCGAUGGcCGAGGc -3'
miRNA:   3'- cuUGGCUGa-----CUAGa-----UGCUGCU-GCUCC- -5'
24056 3' -50.7 NC_005262.1 + 62829 0.66 0.961079
Target:  5'- -uGCCGAC-GAUCggccacggcuCGACGcgguACGAGGa -3'
miRNA:   3'- cuUGGCUGaCUAGau--------GCUGC----UGCUCC- -5'
24056 3' -50.7 NC_005262.1 + 27123 0.66 0.961079
Target:  5'- -cGCCGAgCUGG---ACGACGACGAu- -3'
miRNA:   3'- cuUGGCU-GACUagaUGCUGCUGCUcc -5'
24056 3' -50.7 NC_005262.1 + 21880 0.66 0.957154
Target:  5'- aAGCCGACcGcgCagccggACGACGACGAa- -3'
miRNA:   3'- cUUGGCUGaCuaGa-----UGCUGCUGCUcc -5'
24056 3' -50.7 NC_005262.1 + 22716 0.66 0.957154
Target:  5'- uGGAUCGACUGGaugCU-CGACGAgcCGaAGGa -3'
miRNA:   3'- -CUUGGCUGACUa--GAuGCUGCU--GC-UCC- -5'
24056 3' -50.7 NC_005262.1 + 57287 0.66 0.955511
Target:  5'- cGACCGGCagguccgGGUCgagcgggagcgacACGAgCGGCGAGGg -3'
miRNA:   3'- cUUGGCUGa------CUAGa------------UGCU-GCUGCUCC- -5'
24056 3' -50.7 NC_005262.1 + 9884 0.66 0.952967
Target:  5'- --cCCGAgUUGG-CguuCGACGACGAGGc -3'
miRNA:   3'- cuuGGCU-GACUaGau-GCUGCUGCUCC- -5'
24056 3' -50.7 NC_005262.1 + 23355 0.66 0.952967
Target:  5'- cGGCCGGCgUGAagCgcGCGGCGGCGAaGGc -3'
miRNA:   3'- cUUGGCUG-ACUa-Ga-UGCUGCUGCU-CC- -5'
24056 3' -50.7 NC_005262.1 + 60473 0.66 0.948513
Target:  5'- -cGCCGAC-GAUCuUGCGGcCGGCGAc- -3'
miRNA:   3'- cuUGGCUGaCUAG-AUGCU-GCUGCUcc -5'
24056 3' -50.7 NC_005262.1 + 6624 0.67 0.943788
Target:  5'- -cGCCGAagcccgUGAUCcGCGAgcgugaCGGCGAGGu -3'
miRNA:   3'- cuUGGCUg-----ACUAGaUGCU------GCUGCUCC- -5'
24056 3' -50.7 NC_005262.1 + 8545 0.67 0.943788
Target:  5'- aGACCGGaaaGGUCUACGAuCGcauCGGGGc -3'
miRNA:   3'- cUUGGCUga-CUAGAUGCU-GCu--GCUCC- -5'
24056 3' -50.7 NC_005262.1 + 57002 0.67 0.943788
Target:  5'- cGAGCgCGGCcuUGAUCU-CGcCGGCGAGc -3'
miRNA:   3'- -CUUG-GCUG--ACUAGAuGCuGCUGCUCc -5'
24056 3' -50.7 NC_005262.1 + 40045 0.67 0.938789
Target:  5'- --uCCGugUGA-CU-CGACGauuGCGAGGg -3'
miRNA:   3'- cuuGGCugACUaGAuGCUGC---UGCUCC- -5'
24056 3' -50.7 NC_005262.1 + 43140 0.67 0.933512
Target:  5'- cGGACgCGACgu-UCUACGACaucacCGAGGg -3'
miRNA:   3'- -CUUG-GCUGacuAGAUGCUGcu---GCUCC- -5'
24056 3' -50.7 NC_005262.1 + 5373 0.67 0.933512
Target:  5'- cGACCGcgUGAUCgaccACGACaACGAGGc -3'
miRNA:   3'- cUUGGCugACUAGa---UGCUGcUGCUCC- -5'
24056 3' -50.7 NC_005262.1 + 49882 0.67 0.927958
Target:  5'- cAGCCGGCcgGAaacggucgauugUCgucgGCGACGACGGGc -3'
miRNA:   3'- cUUGGCUGa-CU------------AGa---UGCUGCUGCUCc -5'
24056 3' -50.7 NC_005262.1 + 38556 0.68 0.916013
Target:  5'- --cCCG-UUGAUCUcguaggauACGGCGACGAGc -3'
miRNA:   3'- cuuGGCuGACUAGA--------UGCUGCUGCUCc -5'
24056 3' -50.7 NC_005262.1 + 3322 0.68 0.902959
Target:  5'- cGAGCUG-UUGGUCUugcucuugucGCuGAUGACGAGGc -3'
miRNA:   3'- -CUUGGCuGACUAGA----------UG-CUGCUGCUCC- -5'
24056 3' -50.7 NC_005262.1 + 21614 0.68 0.902959
Target:  5'- cGAACCcuGACUGcccgGagUGCGACGGCGAcGGc -3'
miRNA:   3'- -CUUGG--CUGAC----UagAUGCUGCUGCU-CC- -5'
24056 3' -50.7 NC_005262.1 + 42257 0.68 0.896023
Target:  5'- -cGCCGcGCUca-CUGCGGCGACGAGcGg -3'
miRNA:   3'- cuUGGC-UGAcuaGAUGCUGCUGCUC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.