miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24056 5' -58.6 NC_005262.1 + 46611 0.66 0.602577
Target:  5'- cCGCgCUGGGCugcugcgcgGGcAGGGGCGUcgCGGuCGg -3'
miRNA:   3'- -GCG-GACCCG---------CU-UUCUCGCGuaGCC-GC- -5'
24056 5' -58.6 NC_005262.1 + 23356 0.66 0.602577
Target:  5'- gGCC--GGCGuGAAGcGCGCggCGGCGa -3'
miRNA:   3'- gCGGacCCGC-UUUCuCGCGuaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 20344 0.66 0.602577
Target:  5'- aGCCaUGGGaaaaGAGcaaauGGGUGCAaUCGGCa -3'
miRNA:   3'- gCGG-ACCCg---CUUu----CUCGCGU-AGCCGc -5'
24056 5' -58.6 NC_005262.1 + 23026 0.66 0.602577
Target:  5'- aCGCCUcccucGCGc-GGAGCaugGCGUCGGCGa -3'
miRNA:   3'- -GCGGAcc---CGCuuUCUCG---CGUAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 19185 0.66 0.596205
Target:  5'- aGCCguuggugacGGCGuggcugcaucaguucAAGGAGCGCggCGGCGu -3'
miRNA:   3'- gCGGac-------CCGC---------------UUUCUCGCGuaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 61626 0.66 0.591963
Target:  5'- gCGCCUgaaggagcucgaGGGCGAggAGGaAGUGCuguaccgCGGCGc -3'
miRNA:   3'- -GCGGA------------CCCGCU--UUC-UCGCGua-----GCCGC- -5'
24056 5' -58.6 NC_005262.1 + 7515 0.66 0.591963
Target:  5'- aCGCauccaucGGGCaGGuucGGcGGCGCGUCGGCGc -3'
miRNA:   3'- -GCGga-----CCCG-CUu--UC-UCGCGUAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 46677 0.66 0.591963
Target:  5'- gCGUCUGcGGCGAGGacGGCGC--UGGCGu -3'
miRNA:   3'- -GCGGAC-CCGCUUUc-UCGCGuaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 33876 0.66 0.581381
Target:  5'- aCGCCgcgcGCGAGAcGAucGUGCGUCGGCc -3'
miRNA:   3'- -GCGGacc-CGCUUU-CU--CGCGUAGCCGc -5'
24056 5' -58.6 NC_005262.1 + 50075 0.66 0.570838
Target:  5'- gGCUUcaucGGCGGGAGcgGGCGCcgcugucucGUCGGCGa -3'
miRNA:   3'- gCGGAc---CCGCUUUC--UCGCG---------UAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 17325 0.66 0.570838
Target:  5'- cCGCaaGGaGCGc--GAGCGCGUcgCGGCGa -3'
miRNA:   3'- -GCGgaCC-CGCuuuCUCGCGUA--GCCGC- -5'
24056 5' -58.6 NC_005262.1 + 61878 0.66 0.560343
Target:  5'- gCGCCgcgcaGGCGAAAacGCGCuggucgGUCGGCGc -3'
miRNA:   3'- -GCGGac---CCGCUUUcuCGCG------UAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 5051 0.66 0.560343
Target:  5'- gCGCCUGaucGGCGGGcaggcccgcggcGGcGGCGCGugcgaccggcUCGGCGg -3'
miRNA:   3'- -GCGGAC---CCGCUU------------UC-UCGCGU----------AGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 22244 0.66 0.549901
Target:  5'- uCGCCUccagcucGGCGAugcGGGCaGCcgCGGCGg -3'
miRNA:   3'- -GCGGAc------CCGCUuu-CUCG-CGuaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 1902 0.66 0.548861
Target:  5'- uGCCUucgagcgGGGCGGAGGGuGCGgGUUGcGUGg -3'
miRNA:   3'- gCGGA-------CCCGCUUUCU-CGCgUAGC-CGC- -5'
24056 5' -58.6 NC_005262.1 + 49150 0.67 0.539521
Target:  5'- gGCacggUGGGCGugcAGGcCGCAUCGGCc -3'
miRNA:   3'- gCGg---ACCCGCuu-UCUcGCGUAGCCGc -5'
24056 5' -58.6 NC_005262.1 + 40387 0.67 0.539521
Target:  5'- gGCCUGucugccgcguucGcGCGGAuucAGccGCGCGUCGGCGa -3'
miRNA:   3'- gCGGAC------------C-CGCUU---UCu-CGCGUAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 4649 0.67 0.539521
Target:  5'- cCGCCgcuGGCGcGAGAuGCGCcgCGcGCGc -3'
miRNA:   3'- -GCGGac-CCGCuUUCU-CGCGuaGC-CGC- -5'
24056 5' -58.6 NC_005262.1 + 8058 0.67 0.539521
Target:  5'- gCGuUCUGGGUGAGcguggGGAGCaaucagGCAUCGGgGc -3'
miRNA:   3'- -GC-GGACCCGCUU-----UCUCG------CGUAGCCgC- -5'
24056 5' -58.6 NC_005262.1 + 5202 0.67 0.533324
Target:  5'- gGCC-GGcGCGAccGAGGGCGUAUCcugcacgaucgccguGGCGu -3'
miRNA:   3'- gCGGaCC-CGCU--UUCUCGCGUAG---------------CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.