miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24056 5' -58.6 NC_005262.1 + 48481 0.68 0.449793
Target:  5'- cCGCgUGGGCacGGGcGGCGCGaCGGCa -3'
miRNA:   3'- -GCGgACCCGcuUUC-UCGCGUaGCCGc -5'
24056 5' -58.6 NC_005262.1 + 46644 0.68 0.469062
Target:  5'- uCGUCgUGGGCGucgcGGGAGCGgCGgcCGGCGc -3'
miRNA:   3'- -GCGG-ACCCGCu---UUCUCGC-GUa-GCCGC- -5'
24056 5' -58.6 NC_005262.1 + 21605 0.68 0.478854
Target:  5'- aGCUcGcGGCGAAcccugacugcccGGAGUGCGaCGGCGa -3'
miRNA:   3'- gCGGaC-CCGCUU------------UCUCGCGUaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 13461 0.68 0.478854
Target:  5'- uCGCaaGGGCGcGAAGcccgcGCGCGUCGcGCGc -3'
miRNA:   3'- -GCGgaCCCGC-UUUCu----CGCGUAGC-CGC- -5'
24056 5' -58.6 NC_005262.1 + 10341 0.67 0.495726
Target:  5'- gCGCaaGGGCGcaucugucuacaucGAGGGGCGCAUCaagacGCGg -3'
miRNA:   3'- -GCGgaCCCGC--------------UUUCUCGCGUAGc----CGC- -5'
24056 5' -58.6 NC_005262.1 + 60692 0.67 0.498731
Target:  5'- aCG-CUGGGCuucuucgcGGGCGCGUCGGgGa -3'
miRNA:   3'- -GCgGACCCGcuuu----CUCGCGUAGCCgC- -5'
24056 5' -58.6 NC_005262.1 + 51474 0.67 0.505775
Target:  5'- aCGCCaaGGGCggccaguccuacgaGAucGAGCGgAUCGGCc -3'
miRNA:   3'- -GCGGa-CCCG--------------CUuuCUCGCgUAGCCGc -5'
24056 5' -58.6 NC_005262.1 + 13386 0.67 0.508807
Target:  5'- gCGCCUGGGCGc----GCGCAUCcaCGa -3'
miRNA:   3'- -GCGGACCCGCuuucuCGCGUAGccGC- -5'
24056 5' -58.6 NC_005262.1 + 56432 0.67 0.508807
Target:  5'- gCGCgaGGGC-AAAaAGCGCGugcugaUCGGCGg -3'
miRNA:   3'- -GCGgaCCCGcUUUcUCGCGU------AGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 50803 0.67 0.518967
Target:  5'- uCGCCgaGGGCau-GGAGCGCuUCGcGCc -3'
miRNA:   3'- -GCGGa-CCCGcuuUCUCGCGuAGC-CGc -5'
24056 5' -58.6 NC_005262.1 + 18010 0.67 0.518967
Target:  5'- uCGCCguuGGCGuc--GGCGCcgAUCGGCGg -3'
miRNA:   3'- -GCGGac-CCGCuuucUCGCG--UAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 29757 0.67 0.518967
Target:  5'- gGgUUGGGCGGGcugcgcGGGCGCGggCGGCa -3'
miRNA:   3'- gCgGACCCGCUUu-----CUCGCGUa-GCCGc -5'
24056 5' -58.6 NC_005262.1 + 61162 0.67 0.529207
Target:  5'- gCGgCggcGGGCGAGcugacGGGCGCG-CGGCGc -3'
miRNA:   3'- -GCgGa--CCCGCUUu----CUCGCGUaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 5202 0.67 0.533324
Target:  5'- gGCC-GGcGCGAccGAGGGCGUAUCcugcacgaucgccguGGCGu -3'
miRNA:   3'- gCGGaCC-CGCU--UUCUCGCGUAG---------------CCGC- -5'
24056 5' -58.6 NC_005262.1 + 4649 0.67 0.539521
Target:  5'- cCGCCgcuGGCGcGAGAuGCGCcgCGcGCGc -3'
miRNA:   3'- -GCGGac-CCGCuUUCU-CGCGuaGC-CGC- -5'
24056 5' -58.6 NC_005262.1 + 49150 0.67 0.539521
Target:  5'- gGCacggUGGGCGugcAGGcCGCAUCGGCc -3'
miRNA:   3'- gCGg---ACCCGCuu-UCUcGCGUAGCCGc -5'
24056 5' -58.6 NC_005262.1 + 40387 0.67 0.539521
Target:  5'- gGCCUGucugccgcguucGcGCGGAuucAGccGCGCGUCGGCGa -3'
miRNA:   3'- gCGGAC------------C-CGCUU---UCu-CGCGUAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 8058 0.67 0.539521
Target:  5'- gCGuUCUGGGUGAGcguggGGAGCaaucagGCAUCGGgGc -3'
miRNA:   3'- -GC-GGACCCGCUU-----UCUCG------CGUAGCCgC- -5'
24056 5' -58.6 NC_005262.1 + 1902 0.66 0.548861
Target:  5'- uGCCUucgagcgGGGCGGAGGGuGCGgGUUGcGUGg -3'
miRNA:   3'- gCGGA-------CCCGCUUUCU-CGCgUAGC-CGC- -5'
24056 5' -58.6 NC_005262.1 + 22244 0.66 0.549901
Target:  5'- uCGCCUccagcucGGCGAugcGGGCaGCcgCGGCGg -3'
miRNA:   3'- -GCGGAc------CCGCUuu-CUCG-CGuaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.