miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24056 5' -58.6 NC_005262.1 + 61162 0.67 0.529207
Target:  5'- gCGgCggcGGGCGAGcugacGGGCGCG-CGGCGc -3'
miRNA:   3'- -GCgGa--CCCGCUUu----CUCGCGUaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 18010 0.67 0.518967
Target:  5'- uCGCCguuGGCGuc--GGCGCcgAUCGGCGg -3'
miRNA:   3'- -GCGGac-CCGCuuucUCGCG--UAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 50803 0.67 0.518967
Target:  5'- uCGCCgaGGGCau-GGAGCGCuUCGcGCc -3'
miRNA:   3'- -GCGGa-CCCGcuuUCUCGCGuAGC-CGc -5'
24056 5' -58.6 NC_005262.1 + 29757 0.67 0.518967
Target:  5'- gGgUUGGGCGGGcugcgcGGGCGCGggCGGCa -3'
miRNA:   3'- gCgGACCCGCUUu-----CUCGCGUa-GCCGc -5'
24056 5' -58.6 NC_005262.1 + 56432 0.67 0.508807
Target:  5'- gCGCgaGGGC-AAAaAGCGCGugcugaUCGGCGg -3'
miRNA:   3'- -GCGgaCCCGcUUUcUCGCGU------AGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 13386 0.67 0.508807
Target:  5'- gCGCCUGGGCGc----GCGCAUCcaCGa -3'
miRNA:   3'- -GCGGACCCGCuuucuCGCGUAGccGC- -5'
24056 5' -58.6 NC_005262.1 + 51474 0.67 0.505775
Target:  5'- aCGCCaaGGGCggccaguccuacgaGAucGAGCGgAUCGGCc -3'
miRNA:   3'- -GCGGa-CCCG--------------CUuuCUCGCgUAGCCGc -5'
24056 5' -58.6 NC_005262.1 + 60692 0.67 0.498731
Target:  5'- aCG-CUGGGCuucuucgcGGGCGCGUCGGgGa -3'
miRNA:   3'- -GCgGACCCGcuuu----CUCGCGUAGCCgC- -5'
24056 5' -58.6 NC_005262.1 + 10341 0.67 0.495726
Target:  5'- gCGCaaGGGCGcaucugucuacaucGAGGGGCGCAUCaagacGCGg -3'
miRNA:   3'- -GCGgaCCCGC--------------UUUCUCGCGUAGc----CGC- -5'
24056 5' -58.6 NC_005262.1 + 21605 0.68 0.478854
Target:  5'- aGCUcGcGGCGAAcccugacugcccGGAGUGCGaCGGCGa -3'
miRNA:   3'- gCGGaC-CCGCUU------------UCUCGCGUaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 13461 0.68 0.478854
Target:  5'- uCGCaaGGGCGcGAAGcccgcGCGCGUCGcGCGc -3'
miRNA:   3'- -GCGgaCCCGC-UUUCu----CGCGUAGC-CGC- -5'
24056 5' -58.6 NC_005262.1 + 46644 0.68 0.469062
Target:  5'- uCGUCgUGGGCGucgcGGGAGCGgCGgcCGGCGc -3'
miRNA:   3'- -GCGG-ACCCGCu---UUCUCGC-GUa-GCCGC- -5'
24056 5' -58.6 NC_005262.1 + 48481 0.68 0.449793
Target:  5'- cCGCgUGGGCacGGGcGGCGCGaCGGCa -3'
miRNA:   3'- -GCGgACCCGcuUUC-UCGCGUaGCCGc -5'
24056 5' -58.6 NC_005262.1 + 10460 0.68 0.440323
Target:  5'- aGCC-GGGCGGAAGccGCGaCGacagCGGCGa -3'
miRNA:   3'- gCGGaCCCGCUUUCu-CGC-GUa---GCCGC- -5'
24056 5' -58.6 NC_005262.1 + 31038 0.69 0.418981
Target:  5'- cCGCCUGcGG-GAAGuAGCGCGccgucaugccggaaUCGGCGa -3'
miRNA:   3'- -GCGGAC-CCgCUUUcUCGCGU--------------AGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 44158 0.69 0.403617
Target:  5'- gCGCgCgaucGGGC--AGGAGCGCggCGGCGa -3'
miRNA:   3'- -GCG-Ga---CCCGcuUUCUCGCGuaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 56948 0.69 0.403617
Target:  5'- aCGCCgauccgcgcGGGCGAGuucgcGGGCGUgGUCGGCa -3'
miRNA:   3'- -GCGGa--------CCCGCUUu----CUCGCG-UAGCCGc -5'
24056 5' -58.6 NC_005262.1 + 29497 0.69 0.403617
Target:  5'- aGCCgcauGGCGAuccgcGAGgGCGUCGGUGc -3'
miRNA:   3'- gCGGac--CCGCUuu---CUCgCGUAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 42184 0.69 0.394747
Target:  5'- aCGUgaUGGGCGAcGGcGCGCcgaagaugaucGUCGGCGg -3'
miRNA:   3'- -GCGg-ACCCGCUuUCuCGCG-----------UAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 31159 0.69 0.386004
Target:  5'- uCGCCcuucaGGuCGGc-GAGCGCGUCGGCGu -3'
miRNA:   3'- -GCGGac---CC-GCUuuCUCGCGUAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.