Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24056 | 5' | -58.6 | NC_005262.1 | + | 63678 | 0.69 | 0.385137 |
Target: 5'- aCGCCggcggGGGCGgcGGAGCcagacacgcuaccGCcggCGGCGg -3' miRNA: 3'- -GCGGa----CCCGCuuUCUCG-------------CGua-GCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 29867 | 0.7 | 0.368907 |
Target: 5'- gGCCUGacCGAcgAGGAGCGCG-CGGCGc -3' miRNA: 3'- gCGGACccGCU--UUCUCGCGUaGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 15608 | 0.7 | 0.360555 |
Target: 5'- gCGCgUGcGGC--AGGAGCGCAUCgaGGCGc -3' miRNA: 3'- -GCGgAC-CCGcuUUCUCGCGUAG--CCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 52610 | 0.7 | 0.328482 |
Target: 5'- aGCC-GGGCGAGcuGaAGCGCAcCGGCu -3' miRNA: 3'- gCGGaCCCGCUUu-C-UCGCGUaGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 2974 | 0.71 | 0.305844 |
Target: 5'- aGCCUGaucgaaGGCGAuAGcGGCGCAaCGGCa -3' miRNA: 3'- gCGGAC------CCGCUuUC-UCGCGUaGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 49842 | 0.71 | 0.305844 |
Target: 5'- aGCCUcGGGCGc--GGGCGCcgcCGGCGu -3' miRNA: 3'- gCGGA-CCCGCuuuCUCGCGua-GCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 46982 | 0.71 | 0.298568 |
Target: 5'- gGCCugUGGGCGAAGGcauGGCGCGcgacgcagaUgGGCGa -3' miRNA: 3'- gCGG--ACCCGCUUUC---UCGCGU---------AgCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 35822 | 0.72 | 0.277547 |
Target: 5'- aGCaucaUGGGCc--GGAGCgGCGUCGGCGc -3' miRNA: 3'- gCGg---ACCCGcuuUCUCG-CGUAGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 16685 | 0.72 | 0.2642 |
Target: 5'- aGCC-GGGCG-AGGAGUGCAUCGucacGCa -3' miRNA: 3'- gCGGaCCCGCuUUCUCGCGUAGC----CGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 35562 | 0.72 | 0.257724 |
Target: 5'- uCGCC-GGcGCGGgaAAGAGCGCGaauguugugcUCGGCGc -3' miRNA: 3'- -GCGGaCC-CGCU--UUCUCGCGU----------AGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 26652 | 0.75 | 0.175493 |
Target: 5'- uGCCUGcGCGAAcuGGcgcAGCGCGUCGGCc -3' miRNA: 3'- gCGGACcCGCUU--UC---UCGCGUAGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 59263 | 0.75 | 0.162138 |
Target: 5'- aCGCgCaGGaGCGAAAcGAGCGCGUCGcGCGg -3' miRNA: 3'- -GCG-GaCC-CGCUUU-CUCGCGUAGC-CGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 44109 | 1.08 | 0.000698 |
Target: 5'- uCGCCUGGGCGAAAGAGCGCAUCGGCGu -3' miRNA: 3'- -GCGGACCCGCUUUCUCGCGUAGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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