Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24056 | 5' | -58.6 | NC_005262.1 | + | 1902 | 0.66 | 0.548861 |
Target: 5'- uGCCUucgagcgGGGCGGAGGGuGCGgGUUGcGUGg -3' miRNA: 3'- gCGGA-------CCCGCUUUCU-CGCgUAGC-CGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 2974 | 0.71 | 0.305844 |
Target: 5'- aGCCUGaucgaaGGCGAuAGcGGCGCAaCGGCa -3' miRNA: 3'- gCGGAC------CCGCUuUC-UCGCGUaGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 4649 | 0.67 | 0.539521 |
Target: 5'- cCGCCgcuGGCGcGAGAuGCGCcgCGcGCGc -3' miRNA: 3'- -GCGGac-CCGCuUUCU-CGCGuaGC-CGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 5051 | 0.66 | 0.560343 |
Target: 5'- gCGCCUGaucGGCGGGcaggcccgcggcGGcGGCGCGugcgaccggcUCGGCGg -3' miRNA: 3'- -GCGGAC---CCGCUU------------UC-UCGCGU----------AGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 5202 | 0.67 | 0.533324 |
Target: 5'- gGCC-GGcGCGAccGAGGGCGUAUCcugcacgaucgccguGGCGu -3' miRNA: 3'- gCGGaCC-CGCU--UUCUCGCGUAG---------------CCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 7515 | 0.66 | 0.591963 |
Target: 5'- aCGCauccaucGGGCaGGuucGGcGGCGCGUCGGCGc -3' miRNA: 3'- -GCGga-----CCCG-CUu--UC-UCGCGUAGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 8058 | 0.67 | 0.539521 |
Target: 5'- gCGuUCUGGGUGAGcguggGGAGCaaucagGCAUCGGgGc -3' miRNA: 3'- -GC-GGACCCGCUU-----UCUCG------CGUAGCCgC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 10341 | 0.67 | 0.495726 |
Target: 5'- gCGCaaGGGCGcaucugucuacaucGAGGGGCGCAUCaagacGCGg -3' miRNA: 3'- -GCGgaCCCGC--------------UUUCUCGCGUAGc----CGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 10460 | 0.68 | 0.440323 |
Target: 5'- aGCC-GGGCGGAAGccGCGaCGacagCGGCGa -3' miRNA: 3'- gCGGaCCCGCUUUCu-CGC-GUa---GCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 13386 | 0.67 | 0.508807 |
Target: 5'- gCGCCUGGGCGc----GCGCAUCcaCGa -3' miRNA: 3'- -GCGGACCCGCuuucuCGCGUAGccGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 13461 | 0.68 | 0.478854 |
Target: 5'- uCGCaaGGGCGcGAAGcccgcGCGCGUCGcGCGc -3' miRNA: 3'- -GCGgaCCCGC-UUUCu----CGCGUAGC-CGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 15608 | 0.7 | 0.360555 |
Target: 5'- gCGCgUGcGGC--AGGAGCGCAUCgaGGCGc -3' miRNA: 3'- -GCGgAC-CCGcuUUCUCGCGUAG--CCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 16685 | 0.72 | 0.2642 |
Target: 5'- aGCC-GGGCG-AGGAGUGCAUCGucacGCa -3' miRNA: 3'- gCGGaCCCGCuUUCUCGCGUAGC----CGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 17325 | 0.66 | 0.570838 |
Target: 5'- cCGCaaGGaGCGc--GAGCGCGUcgCGGCGa -3' miRNA: 3'- -GCGgaCC-CGCuuuCUCGCGUA--GCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 18010 | 0.67 | 0.518967 |
Target: 5'- uCGCCguuGGCGuc--GGCGCcgAUCGGCGg -3' miRNA: 3'- -GCGGac-CCGCuuucUCGCG--UAGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 19185 | 0.66 | 0.596205 |
Target: 5'- aGCCguuggugacGGCGuggcugcaucaguucAAGGAGCGCggCGGCGu -3' miRNA: 3'- gCGGac-------CCGC---------------UUUCUCGCGuaGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 20344 | 0.66 | 0.602577 |
Target: 5'- aGCCaUGGGaaaaGAGcaaauGGGUGCAaUCGGCa -3' miRNA: 3'- gCGG-ACCCg---CUUu----CUCGCGU-AGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 21605 | 0.68 | 0.478854 |
Target: 5'- aGCUcGcGGCGAAcccugacugcccGGAGUGCGaCGGCGa -3' miRNA: 3'- gCGGaC-CCGCUU------------UCUCGCGUaGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 22244 | 0.66 | 0.549901 |
Target: 5'- uCGCCUccagcucGGCGAugcGGGCaGCcgCGGCGg -3' miRNA: 3'- -GCGGAc------CCGCUuu-CUCG-CGuaGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 23026 | 0.66 | 0.602577 |
Target: 5'- aCGCCUcccucGCGc-GGAGCaugGCGUCGGCGa -3' miRNA: 3'- -GCGGAcc---CGCuuUCUCG---CGUAGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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