miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24056 5' -58.6 NC_005262.1 + 63678 0.69 0.385137
Target:  5'- aCGCCggcggGGGCGgcGGAGCcagacacgcuaccGCcggCGGCGg -3'
miRNA:   3'- -GCGGa----CCCGCuuUCUCG-------------CGua-GCCGC- -5'
24056 5' -58.6 NC_005262.1 + 61878 0.66 0.560343
Target:  5'- gCGCCgcgcaGGCGAAAacGCGCuggucgGUCGGCGc -3'
miRNA:   3'- -GCGGac---CCGCUUUcuCGCG------UAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 61626 0.66 0.591963
Target:  5'- gCGCCUgaaggagcucgaGGGCGAggAGGaAGUGCuguaccgCGGCGc -3'
miRNA:   3'- -GCGGA------------CCCGCU--UUC-UCGCGua-----GCCGC- -5'
24056 5' -58.6 NC_005262.1 + 61162 0.67 0.529207
Target:  5'- gCGgCggcGGGCGAGcugacGGGCGCG-CGGCGc -3'
miRNA:   3'- -GCgGa--CCCGCUUu----CUCGCGUaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 60692 0.67 0.498731
Target:  5'- aCG-CUGGGCuucuucgcGGGCGCGUCGGgGa -3'
miRNA:   3'- -GCgGACCCGcuuu----CUCGCGUAGCCgC- -5'
24056 5' -58.6 NC_005262.1 + 59263 0.75 0.162138
Target:  5'- aCGCgCaGGaGCGAAAcGAGCGCGUCGcGCGg -3'
miRNA:   3'- -GCG-GaCC-CGCUUU-CUCGCGUAGC-CGC- -5'
24056 5' -58.6 NC_005262.1 + 56948 0.69 0.403617
Target:  5'- aCGCCgauccgcgcGGGCGAGuucgcGGGCGUgGUCGGCa -3'
miRNA:   3'- -GCGGa--------CCCGCUUu----CUCGCG-UAGCCGc -5'
24056 5' -58.6 NC_005262.1 + 56432 0.67 0.508807
Target:  5'- gCGCgaGGGC-AAAaAGCGCGugcugaUCGGCGg -3'
miRNA:   3'- -GCGgaCCCGcUUUcUCGCGU------AGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 52610 0.7 0.328482
Target:  5'- aGCC-GGGCGAGcuGaAGCGCAcCGGCu -3'
miRNA:   3'- gCGGaCCCGCUUu-C-UCGCGUaGCCGc -5'
24056 5' -58.6 NC_005262.1 + 51474 0.67 0.505775
Target:  5'- aCGCCaaGGGCggccaguccuacgaGAucGAGCGgAUCGGCc -3'
miRNA:   3'- -GCGGa-CCCG--------------CUuuCUCGCgUAGCCGc -5'
24056 5' -58.6 NC_005262.1 + 50803 0.67 0.518967
Target:  5'- uCGCCgaGGGCau-GGAGCGCuUCGcGCc -3'
miRNA:   3'- -GCGGa-CCCGcuuUCUCGCGuAGC-CGc -5'
24056 5' -58.6 NC_005262.1 + 50075 0.66 0.570838
Target:  5'- gGCUUcaucGGCGGGAGcgGGCGCcgcugucucGUCGGCGa -3'
miRNA:   3'- gCGGAc---CCGCUUUC--UCGCG---------UAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 49842 0.71 0.305844
Target:  5'- aGCCUcGGGCGc--GGGCGCcgcCGGCGu -3'
miRNA:   3'- gCGGA-CCCGCuuuCUCGCGua-GCCGC- -5'
24056 5' -58.6 NC_005262.1 + 49150 0.67 0.539521
Target:  5'- gGCacggUGGGCGugcAGGcCGCAUCGGCc -3'
miRNA:   3'- gCGg---ACCCGCuu-UCUcGCGUAGCCGc -5'
24056 5' -58.6 NC_005262.1 + 48481 0.68 0.449793
Target:  5'- cCGCgUGGGCacGGGcGGCGCGaCGGCa -3'
miRNA:   3'- -GCGgACCCGcuUUC-UCGCGUaGCCGc -5'
24056 5' -58.6 NC_005262.1 + 46982 0.71 0.298568
Target:  5'- gGCCugUGGGCGAAGGcauGGCGCGcgacgcagaUgGGCGa -3'
miRNA:   3'- gCGG--ACCCGCUUUC---UCGCGU---------AgCCGC- -5'
24056 5' -58.6 NC_005262.1 + 46677 0.66 0.591963
Target:  5'- gCGUCUGcGGCGAGGacGGCGC--UGGCGu -3'
miRNA:   3'- -GCGGAC-CCGCUUUc-UCGCGuaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 46644 0.68 0.469062
Target:  5'- uCGUCgUGGGCGucgcGGGAGCGgCGgcCGGCGc -3'
miRNA:   3'- -GCGG-ACCCGCu---UUCUCGC-GUa-GCCGC- -5'
24056 5' -58.6 NC_005262.1 + 46611 0.66 0.602577
Target:  5'- cCGCgCUGGGCugcugcgcgGGcAGGGGCGUcgCGGuCGg -3'
miRNA:   3'- -GCG-GACCCG---------CU-UUCUCGCGuaGCC-GC- -5'
24056 5' -58.6 NC_005262.1 + 44158 0.69 0.403617
Target:  5'- gCGCgCgaucGGGC--AGGAGCGCggCGGCGa -3'
miRNA:   3'- -GCG-Ga---CCCGcuUUCUCGCGuaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.