miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24056 5' -58.6 NC_005262.1 + 44109 1.08 0.000698
Target:  5'- uCGCCUGGGCGAAAGAGCGCAUCGGCGu -3'
miRNA:   3'- -GCGGACCCGCUUUCUCGCGUAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 42184 0.69 0.394747
Target:  5'- aCGUgaUGGGCGAcGGcGCGCcgaagaugaucGUCGGCGg -3'
miRNA:   3'- -GCGg-ACCCGCUuUCuCGCG-----------UAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 40387 0.67 0.539521
Target:  5'- gGCCUGucugccgcguucGcGCGGAuucAGccGCGCGUCGGCGa -3'
miRNA:   3'- gCGGAC------------C-CGCUU---UCu-CGCGUAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 35822 0.72 0.277547
Target:  5'- aGCaucaUGGGCc--GGAGCgGCGUCGGCGc -3'
miRNA:   3'- gCGg---ACCCGcuuUCUCG-CGUAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 35562 0.72 0.257724
Target:  5'- uCGCC-GGcGCGGgaAAGAGCGCGaauguugugcUCGGCGc -3'
miRNA:   3'- -GCGGaCC-CGCU--UUCUCGCGU----------AGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 33876 0.66 0.581381
Target:  5'- aCGCCgcgcGCGAGAcGAucGUGCGUCGGCc -3'
miRNA:   3'- -GCGGacc-CGCUUU-CU--CGCGUAGCCGc -5'
24056 5' -58.6 NC_005262.1 + 31159 0.69 0.386004
Target:  5'- uCGCCcuucaGGuCGGc-GAGCGCGUCGGCGu -3'
miRNA:   3'- -GCGGac---CC-GCUuuCUCGCGUAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 31038 0.69 0.418981
Target:  5'- cCGCCUGcGG-GAAGuAGCGCGccgucaugccggaaUCGGCGa -3'
miRNA:   3'- -GCGGAC-CCgCUUUcUCGCGU--------------AGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 29867 0.7 0.368907
Target:  5'- gGCCUGacCGAcgAGGAGCGCG-CGGCGc -3'
miRNA:   3'- gCGGACccGCU--UUCUCGCGUaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 29757 0.67 0.518967
Target:  5'- gGgUUGGGCGGGcugcgcGGGCGCGggCGGCa -3'
miRNA:   3'- gCgGACCCGCUUu-----CUCGCGUa-GCCGc -5'
24056 5' -58.6 NC_005262.1 + 29497 0.69 0.403617
Target:  5'- aGCCgcauGGCGAuccgcGAGgGCGUCGGUGc -3'
miRNA:   3'- gCGGac--CCGCUuu---CUCgCGUAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 26652 0.75 0.175493
Target:  5'- uGCCUGcGCGAAcuGGcgcAGCGCGUCGGCc -3'
miRNA:   3'- gCGGACcCGCUU--UC---UCGCGUAGCCGc -5'
24056 5' -58.6 NC_005262.1 + 23356 0.66 0.602577
Target:  5'- gGCC--GGCGuGAAGcGCGCggCGGCGa -3'
miRNA:   3'- gCGGacCCGC-UUUCuCGCGuaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 23026 0.66 0.602577
Target:  5'- aCGCCUcccucGCGc-GGAGCaugGCGUCGGCGa -3'
miRNA:   3'- -GCGGAcc---CGCuuUCUCG---CGUAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 22244 0.66 0.549901
Target:  5'- uCGCCUccagcucGGCGAugcGGGCaGCcgCGGCGg -3'
miRNA:   3'- -GCGGAc------CCGCUuu-CUCG-CGuaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 21605 0.68 0.478854
Target:  5'- aGCUcGcGGCGAAcccugacugcccGGAGUGCGaCGGCGa -3'
miRNA:   3'- gCGGaC-CCGCUU------------UCUCGCGUaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 20344 0.66 0.602577
Target:  5'- aGCCaUGGGaaaaGAGcaaauGGGUGCAaUCGGCa -3'
miRNA:   3'- gCGG-ACCCg---CUUu----CUCGCGU-AGCCGc -5'
24056 5' -58.6 NC_005262.1 + 19185 0.66 0.596205
Target:  5'- aGCCguuggugacGGCGuggcugcaucaguucAAGGAGCGCggCGGCGu -3'
miRNA:   3'- gCGGac-------CCGC---------------UUUCUCGCGuaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 18010 0.67 0.518967
Target:  5'- uCGCCguuGGCGuc--GGCGCcgAUCGGCGg -3'
miRNA:   3'- -GCGGac-CCGCuuucUCGCG--UAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 17325 0.66 0.570838
Target:  5'- cCGCaaGGaGCGc--GAGCGCGUcgCGGCGa -3'
miRNA:   3'- -GCGgaCC-CGCuuuCUCGCGUA--GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.