Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24056 | 5' | -58.6 | NC_005262.1 | + | 59263 | 0.75 | 0.162138 |
Target: 5'- aCGCgCaGGaGCGAAAcGAGCGCGUCGcGCGg -3' miRNA: 3'- -GCG-GaCC-CGCUUU-CUCGCGUAGC-CGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 35562 | 0.72 | 0.257724 |
Target: 5'- uCGCC-GGcGCGGgaAAGAGCGCGaauguugugcUCGGCGc -3' miRNA: 3'- -GCGGaCC-CGCU--UUCUCGCGU----------AGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 16685 | 0.72 | 0.2642 |
Target: 5'- aGCC-GGGCG-AGGAGUGCAUCGucacGCa -3' miRNA: 3'- gCGGaCCCGCuUUCUCGCGUAGC----CGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 35822 | 0.72 | 0.277547 |
Target: 5'- aGCaucaUGGGCc--GGAGCgGCGUCGGCGc -3' miRNA: 3'- gCGg---ACCCGcuuUCUCG-CGUAGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 46982 | 0.71 | 0.298568 |
Target: 5'- gGCCugUGGGCGAAGGcauGGCGCGcgacgcagaUgGGCGa -3' miRNA: 3'- gCGG--ACCCGCUUUC---UCGCGU---------AgCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 52610 | 0.7 | 0.328482 |
Target: 5'- aGCC-GGGCGAGcuGaAGCGCAcCGGCu -3' miRNA: 3'- gCGGaCCCGCUUu-C-UCGCGUaGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 15608 | 0.7 | 0.360555 |
Target: 5'- gCGCgUGcGGC--AGGAGCGCAUCgaGGCGc -3' miRNA: 3'- -GCGgAC-CCGcuUUCUCGCGUAG--CCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 29867 | 0.7 | 0.368907 |
Target: 5'- gGCCUGacCGAcgAGGAGCGCG-CGGCGc -3' miRNA: 3'- gCGGACccGCU--UUCUCGCGUaGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 21605 | 0.68 | 0.478854 |
Target: 5'- aGCUcGcGGCGAAcccugacugcccGGAGUGCGaCGGCGa -3' miRNA: 3'- gCGGaC-CCGCUU------------UCUCGCGUaGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 48481 | 0.68 | 0.449793 |
Target: 5'- cCGCgUGGGCacGGGcGGCGCGaCGGCa -3' miRNA: 3'- -GCGgACCCGcuUUC-UCGCGUaGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 10460 | 0.68 | 0.440323 |
Target: 5'- aGCC-GGGCGGAAGccGCGaCGacagCGGCGa -3' miRNA: 3'- gCGGaCCCGCUUUCu-CGC-GUa---GCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 44158 | 0.69 | 0.403617 |
Target: 5'- gCGCgCgaucGGGC--AGGAGCGCggCGGCGa -3' miRNA: 3'- -GCG-Ga---CCCGcuUUCUCGCGuaGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 56948 | 0.69 | 0.403617 |
Target: 5'- aCGCCgauccgcgcGGGCGAGuucgcGGGCGUgGUCGGCa -3' miRNA: 3'- -GCGGa--------CCCGCUUu----CUCGCG-UAGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 29497 | 0.69 | 0.403617 |
Target: 5'- aGCCgcauGGCGAuccgcGAGgGCGUCGGUGc -3' miRNA: 3'- gCGGac--CCGCUuu---CUCgCGUAGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 42184 | 0.69 | 0.394747 |
Target: 5'- aCGUgaUGGGCGAcGGcGCGCcgaagaugaucGUCGGCGg -3' miRNA: 3'- -GCGg-ACCCGCUuUCuCGCG-----------UAGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 26652 | 0.75 | 0.175493 |
Target: 5'- uGCCUGcGCGAAcuGGcgcAGCGCGUCGGCc -3' miRNA: 3'- gCGGACcCGCUU--UC---UCGCGUAGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 46611 | 0.66 | 0.602577 |
Target: 5'- cCGCgCUGGGCugcugcgcgGGcAGGGGCGUcgCGGuCGg -3' miRNA: 3'- -GCG-GACCCG---------CU-UUCUCGCGuaGCC-GC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 20344 | 0.66 | 0.602577 |
Target: 5'- aGCCaUGGGaaaaGAGcaaauGGGUGCAaUCGGCa -3' miRNA: 3'- gCGG-ACCCg---CUUu----CUCGCGU-AGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 19185 | 0.66 | 0.596205 |
Target: 5'- aGCCguuggugacGGCGuggcugcaucaguucAAGGAGCGCggCGGCGu -3' miRNA: 3'- gCGGac-------CCGC---------------UUUCUCGCGuaGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 46677 | 0.66 | 0.591963 |
Target: 5'- gCGUCUGcGGCGAGGacGGCGC--UGGCGu -3' miRNA: 3'- -GCGGAC-CCGCUUUc-UCGCGuaGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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