miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24056 5' -58.6 NC_005262.1 + 23026 0.66 0.602577
Target:  5'- aCGCCUcccucGCGc-GGAGCaugGCGUCGGCGa -3'
miRNA:   3'- -GCGGAcc---CGCuuUCUCG---CGUAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 46644 0.68 0.469062
Target:  5'- uCGUCgUGGGCGucgcGGGAGCGgCGgcCGGCGc -3'
miRNA:   3'- -GCGG-ACCCGCu---UUCUCGC-GUa-GCCGC- -5'
24056 5' -58.6 NC_005262.1 + 4649 0.67 0.539521
Target:  5'- cCGCCgcuGGCGcGAGAuGCGCcgCGcGCGc -3'
miRNA:   3'- -GCGGac-CCGCuUUCU-CGCGuaGC-CGC- -5'
24056 5' -58.6 NC_005262.1 + 22244 0.66 0.549901
Target:  5'- uCGCCUccagcucGGCGAugcGGGCaGCcgCGGCGg -3'
miRNA:   3'- -GCGGAc------CCGCUuu-CUCG-CGuaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 50075 0.66 0.570838
Target:  5'- gGCUUcaucGGCGGGAGcgGGCGCcgcugucucGUCGGCGa -3'
miRNA:   3'- gCGGAc---CCGCUUUC--UCGCG---------UAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 46677 0.66 0.591963
Target:  5'- gCGUCUGcGGCGAGGacGGCGC--UGGCGu -3'
miRNA:   3'- -GCGGAC-CCGCUUUc-UCGCGuaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 26652 0.75 0.175493
Target:  5'- uGCCUGcGCGAAcuGGcgcAGCGCGUCGGCc -3'
miRNA:   3'- gCGGACcCGCUU--UC---UCGCGUAGCCGc -5'
24056 5' -58.6 NC_005262.1 + 49842 0.71 0.305844
Target:  5'- aGCCUcGGGCGc--GGGCGCcgcCGGCGu -3'
miRNA:   3'- gCGGA-CCCGCuuuCUCGCGua-GCCGC- -5'
24056 5' -58.6 NC_005262.1 + 31159 0.69 0.386004
Target:  5'- uCGCCcuucaGGuCGGc-GAGCGCGUCGGCGu -3'
miRNA:   3'- -GCGGac---CC-GCUuuCUCGCGUAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 29757 0.67 0.518967
Target:  5'- gGgUUGGGCGGGcugcgcGGGCGCGggCGGCa -3'
miRNA:   3'- gCgGACCCGCUUu-----CUCGCGUa-GCCGc -5'
24056 5' -58.6 NC_005262.1 + 61878 0.66 0.560343
Target:  5'- gCGCCgcgcaGGCGAAAacGCGCuggucgGUCGGCGc -3'
miRNA:   3'- -GCGGac---CCGCUUUcuCGCG------UAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 46611 0.66 0.602577
Target:  5'- cCGCgCUGGGCugcugcgcgGGcAGGGGCGUcgCGGuCGg -3'
miRNA:   3'- -GCG-GACCCG---------CU-UUCUCGCGuaGCC-GC- -5'
24056 5' -58.6 NC_005262.1 + 63678 0.69 0.385137
Target:  5'- aCGCCggcggGGGCGgcGGAGCcagacacgcuaccGCcggCGGCGg -3'
miRNA:   3'- -GCGGa----CCCGCuuUCUCG-------------CGua-GCCGC- -5'
24056 5' -58.6 NC_005262.1 + 20344 0.66 0.602577
Target:  5'- aGCCaUGGGaaaaGAGcaaauGGGUGCAaUCGGCa -3'
miRNA:   3'- gCGG-ACCCg---CUUu----CUCGCGU-AGCCGc -5'
24056 5' -58.6 NC_005262.1 + 18010 0.67 0.518967
Target:  5'- uCGCCguuGGCGuc--GGCGCcgAUCGGCGg -3'
miRNA:   3'- -GCGGac-CCGCuuucUCGCG--UAGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 2974 0.71 0.305844
Target:  5'- aGCCUGaucgaaGGCGAuAGcGGCGCAaCGGCa -3'
miRNA:   3'- gCGGAC------CCGCUuUC-UCGCGUaGCCGc -5'
24056 5' -58.6 NC_005262.1 + 19185 0.66 0.596205
Target:  5'- aGCCguuggugacGGCGuggcugcaucaguucAAGGAGCGCggCGGCGu -3'
miRNA:   3'- gCGGac-------CCGC---------------UUUCUCGCGuaGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 31038 0.69 0.418981
Target:  5'- cCGCCUGcGG-GAAGuAGCGCGccgucaugccggaaUCGGCGa -3'
miRNA:   3'- -GCGGAC-CCgCUUUcUCGCGU--------------AGCCGC- -5'
24056 5' -58.6 NC_005262.1 + 48481 0.68 0.449793
Target:  5'- cCGCgUGGGCacGGGcGGCGCGaCGGCa -3'
miRNA:   3'- -GCGgACCCGcuUUC-UCGCGUaGCCGc -5'
24056 5' -58.6 NC_005262.1 + 10460 0.68 0.440323
Target:  5'- aGCC-GGGCGGAAGccGCGaCGacagCGGCGa -3'
miRNA:   3'- gCGGaCCCGCUUUCu-CGC-GUa---GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.