Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24056 | 5' | -58.6 | NC_005262.1 | + | 1902 | 0.66 | 0.548861 |
Target: 5'- uGCCUucgagcgGGGCGGAGGGuGCGgGUUGcGUGg -3' miRNA: 3'- gCGGA-------CCCGCUUUCU-CGCgUAGC-CGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 5051 | 0.66 | 0.560343 |
Target: 5'- gCGCCUGaucGGCGGGcaggcccgcggcGGcGGCGCGugcgaccggcUCGGCGg -3' miRNA: 3'- -GCGGAC---CCGCUU------------UC-UCGCGU----------AGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 46982 | 0.71 | 0.298568 |
Target: 5'- gGCCugUGGGCGAAGGcauGGCGCGcgacgcagaUgGGCGa -3' miRNA: 3'- gCGG--ACCCGCUUUC---UCGCGU---------AgCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 17325 | 0.66 | 0.570838 |
Target: 5'- cCGCaaGGaGCGc--GAGCGCGUcgCGGCGa -3' miRNA: 3'- -GCGgaCC-CGCuuuCUCGCGUA--GCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 8058 | 0.67 | 0.539521 |
Target: 5'- gCGuUCUGGGUGAGcguggGGAGCaaucagGCAUCGGgGc -3' miRNA: 3'- -GC-GGACCCGCUU-----UCUCG------CGUAGCCgC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 5202 | 0.67 | 0.533324 |
Target: 5'- gGCC-GGcGCGAccGAGGGCGUAUCcugcacgaucgccguGGCGu -3' miRNA: 3'- gCGGaCC-CGCU--UUCUCGCGUAG---------------CCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 35822 | 0.72 | 0.277547 |
Target: 5'- aGCaucaUGGGCc--GGAGCgGCGUCGGCGc -3' miRNA: 3'- gCGg---ACCCGcuuUCUCG-CGUAGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 52610 | 0.7 | 0.328482 |
Target: 5'- aGCC-GGGCGAGcuGaAGCGCAcCGGCu -3' miRNA: 3'- gCGGaCCCGCUUu-C-UCGCGUaGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 42184 | 0.69 | 0.394747 |
Target: 5'- aCGUgaUGGGCGAcGGcGCGCcgaagaugaucGUCGGCGg -3' miRNA: 3'- -GCGg-ACCCGCUuUCuCGCG-----------UAGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 29497 | 0.69 | 0.403617 |
Target: 5'- aGCCgcauGGCGAuccgcGAGgGCGUCGGUGc -3' miRNA: 3'- gCGGac--CCGCUuu---CUCgCGUAGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 56948 | 0.69 | 0.403617 |
Target: 5'- aCGCCgauccgcgcGGGCGAGuucgcGGGCGUgGUCGGCa -3' miRNA: 3'- -GCGGa--------CCCGCUUu----CUCGCG-UAGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 44158 | 0.69 | 0.403617 |
Target: 5'- gCGCgCgaucGGGC--AGGAGCGCggCGGCGa -3' miRNA: 3'- -GCG-Ga---CCCGcuUUCUCGCGuaGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 10460 | 0.68 | 0.440323 |
Target: 5'- aGCC-GGGCGGAAGccGCGaCGacagCGGCGa -3' miRNA: 3'- gCGGaCCCGCUUUCu-CGC-GUa---GCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 48481 | 0.68 | 0.449793 |
Target: 5'- cCGCgUGGGCacGGGcGGCGCGaCGGCa -3' miRNA: 3'- -GCGgACCCGcuUUC-UCGCGUaGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 60692 | 0.67 | 0.498731 |
Target: 5'- aCG-CUGGGCuucuucgcGGGCGCGUCGGgGa -3' miRNA: 3'- -GCgGACCCGcuuu----CUCGCGUAGCCgC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 51474 | 0.67 | 0.505775 |
Target: 5'- aCGCCaaGGGCggccaguccuacgaGAucGAGCGgAUCGGCc -3' miRNA: 3'- -GCGGa-CCCG--------------CUuuCUCGCgUAGCCGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 13386 | 0.67 | 0.508807 |
Target: 5'- gCGCCUGGGCGc----GCGCAUCcaCGa -3' miRNA: 3'- -GCGGACCCGCuuucuCGCGUAGccGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 56432 | 0.67 | 0.508807 |
Target: 5'- gCGCgaGGGC-AAAaAGCGCGugcugaUCGGCGg -3' miRNA: 3'- -GCGgaCCCGcUUUcUCGCGU------AGCCGC- -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 50803 | 0.67 | 0.518967 |
Target: 5'- uCGCCgaGGGCau-GGAGCGCuUCGcGCc -3' miRNA: 3'- -GCGGa-CCCGcuuUCUCGCGuAGC-CGc -5' |
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24056 | 5' | -58.6 | NC_005262.1 | + | 61162 | 0.67 | 0.529207 |
Target: 5'- gCGgCggcGGGCGAGcugacGGGCGCG-CGGCGc -3' miRNA: 3'- -GCgGa--CCCGCUUu----CUCGCGUaGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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