Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24057 | 5' | -55.7 | NC_005262.1 | + | 11670 | 0.66 | 0.73461 |
Target: 5'- ------aCGCUGGCCGGCAGagcuUCGCGc -3' miRNA: 3'- ucuuccaGUGACUGGUCGUCg---AGCGC- -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 50484 | 0.66 | 0.73461 |
Target: 5'- ---cGG-CGCUGAUCGccgcGCGGUUCGCGu -3' miRNA: 3'- ucuuCCaGUGACUGGU----CGUCGAGCGC- -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 22798 | 0.66 | 0.724082 |
Target: 5'- cGAGGGgaUUAC-GACCGGCauguGGCUcCGCGa -3' miRNA: 3'- uCUUCC--AGUGaCUGGUCG----UCGA-GCGC- -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 35228 | 0.66 | 0.702765 |
Target: 5'- cGGAGGUCgGCggcgcGAUCGGCAGCggcugggCGCc -3' miRNA: 3'- uCUUCCAG-UGa----CUGGUCGUCGa------GCGc -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 53053 | 0.66 | 0.702765 |
Target: 5'- uGGAGuacgacgCGCUGACCGGC-GCgaUCGCGa -3' miRNA: 3'- uCUUCca-----GUGACUGGUCGuCG--AGCGC- -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 25857 | 0.66 | 0.691998 |
Target: 5'- aAGAAGuggaaucgguaGUCGCgGGCCgugAGCGGCUUGCc -3' miRNA: 3'- -UCUUC-----------CAGUGaCUGG---UCGUCGAGCGc -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 31186 | 0.66 | 0.691998 |
Target: 5'- uAGGAGGUaggauuguCgGGCC-GCGGCUCGCc -3' miRNA: 3'- -UCUUCCAgu------GaCUGGuCGUCGAGCGc -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 10426 | 0.66 | 0.681175 |
Target: 5'- gAGAucGUCGCUGACCGcauGCAgauGCUCgGCa -3' miRNA: 3'- -UCUucCAGUGACUGGU---CGU---CGAG-CGc -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 10896 | 0.67 | 0.637525 |
Target: 5'- cGcuGGUCG-UGAUCgucgcGGCAGCUCGCGc -3' miRNA: 3'- uCuuCCAGUgACUGG-----UCGUCGAGCGC- -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 33009 | 0.67 | 0.637525 |
Target: 5'- uGAAGG-CGCUGGCgAGCG--UCGCGc -3' miRNA: 3'- uCUUCCaGUGACUGgUCGUcgAGCGC- -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 50535 | 0.68 | 0.572082 |
Target: 5'- cGGAcuGGU-GCUGAUgAGCAgGCUCGCGc -3' miRNA: 3'- -UCUu-CCAgUGACUGgUCGU-CGAGCGC- -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 49459 | 0.69 | 0.550566 |
Target: 5'- gAGAAGGUCagcaagagcacGCUGAagcgcgcauucuCCGGCGGUgCGCGc -3' miRNA: 3'- -UCUUCCAG-----------UGACU------------GGUCGUCGaGCGC- -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 5971 | 0.69 | 0.5399 |
Target: 5'- uAGggGGUCgGCUuuugccGGCCGGCugcuGCUCGUu -3' miRNA: 3'- -UCuuCCAG-UGA------CUGGUCGu---CGAGCGc -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 47673 | 0.69 | 0.5399 |
Target: 5'- ---cGGUCGCUGaaaGCCAGCcGCUuCGCu -3' miRNA: 3'- ucuuCCAGUGAC---UGGUCGuCGA-GCGc -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 18000 | 0.7 | 0.477609 |
Target: 5'- cGucGG-CGCcGAUCGGCGGCUCGCc -3' miRNA: 3'- uCuuCCaGUGaCUGGUCGUCGAGCGc -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 60381 | 0.7 | 0.467566 |
Target: 5'- cGAAGGUCGCcGGCCgcaagaucgucGGCGGCauggCGCa -3' miRNA: 3'- uCUUCCAGUGaCUGG-----------UCGUCGa---GCGc -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 53559 | 0.7 | 0.44489 |
Target: 5'- gAGAuGGUgcucggcgcgcacgCGCUGACCGGCAGCauguacCGCGc -3' miRNA: 3'- -UCUuCCA--------------GUGACUGGUCGUCGa-----GCGC- -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 424 | 0.71 | 0.438111 |
Target: 5'- cGGAGccGGUCACUGucGCCAGCuuacucgaaugGGCUgGCGu -3' miRNA: 3'- -UCUU--CCAGUGAC--UGGUCG-----------UCGAgCGC- -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 61124 | 0.72 | 0.34905 |
Target: 5'- cGAAGGggacgguguacgacgCGCUGGCgCAGCAGaUCGCGg -3' miRNA: 3'- uCUUCCa--------------GUGACUG-GUCGUCgAGCGC- -5' |
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24057 | 5' | -55.7 | NC_005262.1 | + | 26019 | 0.73 | 0.339985 |
Target: 5'- cGAGGG-CACguacuacGcCCAGCAGCUCGCc -3' miRNA: 3'- uCUUCCaGUGa------CuGGUCGUCGAGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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