miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24057 5' -55.7 NC_005262.1 + 11670 0.66 0.73461
Target:  5'- ------aCGCUGGCCGGCAGagcuUCGCGc -3'
miRNA:   3'- ucuuccaGUGACUGGUCGUCg---AGCGC- -5'
24057 5' -55.7 NC_005262.1 + 50484 0.66 0.73461
Target:  5'- ---cGG-CGCUGAUCGccgcGCGGUUCGCGu -3'
miRNA:   3'- ucuuCCaGUGACUGGU----CGUCGAGCGC- -5'
24057 5' -55.7 NC_005262.1 + 22798 0.66 0.724082
Target:  5'- cGAGGGgaUUAC-GACCGGCauguGGCUcCGCGa -3'
miRNA:   3'- uCUUCC--AGUGaCUGGUCG----UCGA-GCGC- -5'
24057 5' -55.7 NC_005262.1 + 35228 0.66 0.702765
Target:  5'- cGGAGGUCgGCggcgcGAUCGGCAGCggcugggCGCc -3'
miRNA:   3'- uCUUCCAG-UGa----CUGGUCGUCGa------GCGc -5'
24057 5' -55.7 NC_005262.1 + 53053 0.66 0.702765
Target:  5'- uGGAGuacgacgCGCUGACCGGC-GCgaUCGCGa -3'
miRNA:   3'- uCUUCca-----GUGACUGGUCGuCG--AGCGC- -5'
24057 5' -55.7 NC_005262.1 + 25857 0.66 0.691998
Target:  5'- aAGAAGuggaaucgguaGUCGCgGGCCgugAGCGGCUUGCc -3'
miRNA:   3'- -UCUUC-----------CAGUGaCUGG---UCGUCGAGCGc -5'
24057 5' -55.7 NC_005262.1 + 31186 0.66 0.691998
Target:  5'- uAGGAGGUaggauuguCgGGCC-GCGGCUCGCc -3'
miRNA:   3'- -UCUUCCAgu------GaCUGGuCGUCGAGCGc -5'
24057 5' -55.7 NC_005262.1 + 10426 0.66 0.681175
Target:  5'- gAGAucGUCGCUGACCGcauGCAgauGCUCgGCa -3'
miRNA:   3'- -UCUucCAGUGACUGGU---CGU---CGAG-CGc -5'
24057 5' -55.7 NC_005262.1 + 10896 0.67 0.637525
Target:  5'- cGcuGGUCG-UGAUCgucgcGGCAGCUCGCGc -3'
miRNA:   3'- uCuuCCAGUgACUGG-----UCGUCGAGCGC- -5'
24057 5' -55.7 NC_005262.1 + 33009 0.67 0.637525
Target:  5'- uGAAGG-CGCUGGCgAGCG--UCGCGc -3'
miRNA:   3'- uCUUCCaGUGACUGgUCGUcgAGCGC- -5'
24057 5' -55.7 NC_005262.1 + 50535 0.68 0.572082
Target:  5'- cGGAcuGGU-GCUGAUgAGCAgGCUCGCGc -3'
miRNA:   3'- -UCUu-CCAgUGACUGgUCGU-CGAGCGC- -5'
24057 5' -55.7 NC_005262.1 + 49459 0.69 0.550566
Target:  5'- gAGAAGGUCagcaagagcacGCUGAagcgcgcauucuCCGGCGGUgCGCGc -3'
miRNA:   3'- -UCUUCCAG-----------UGACU------------GGUCGUCGaGCGC- -5'
24057 5' -55.7 NC_005262.1 + 5971 0.69 0.5399
Target:  5'- uAGggGGUCgGCUuuugccGGCCGGCugcuGCUCGUu -3'
miRNA:   3'- -UCuuCCAG-UGA------CUGGUCGu---CGAGCGc -5'
24057 5' -55.7 NC_005262.1 + 47673 0.69 0.5399
Target:  5'- ---cGGUCGCUGaaaGCCAGCcGCUuCGCu -3'
miRNA:   3'- ucuuCCAGUGAC---UGGUCGuCGA-GCGc -5'
24057 5' -55.7 NC_005262.1 + 18000 0.7 0.477609
Target:  5'- cGucGG-CGCcGAUCGGCGGCUCGCc -3'
miRNA:   3'- uCuuCCaGUGaCUGGUCGUCGAGCGc -5'
24057 5' -55.7 NC_005262.1 + 60381 0.7 0.467566
Target:  5'- cGAAGGUCGCcGGCCgcaagaucgucGGCGGCauggCGCa -3'
miRNA:   3'- uCUUCCAGUGaCUGG-----------UCGUCGa---GCGc -5'
24057 5' -55.7 NC_005262.1 + 53559 0.7 0.44489
Target:  5'- gAGAuGGUgcucggcgcgcacgCGCUGACCGGCAGCauguacCGCGc -3'
miRNA:   3'- -UCUuCCA--------------GUGACUGGUCGUCGa-----GCGC- -5'
24057 5' -55.7 NC_005262.1 + 424 0.71 0.438111
Target:  5'- cGGAGccGGUCACUGucGCCAGCuuacucgaaugGGCUgGCGu -3'
miRNA:   3'- -UCUU--CCAGUGAC--UGGUCG-----------UCGAgCGC- -5'
24057 5' -55.7 NC_005262.1 + 61124 0.72 0.34905
Target:  5'- cGAAGGggacgguguacgacgCGCUGGCgCAGCAGaUCGCGg -3'
miRNA:   3'- uCUUCCa--------------GUGACUG-GUCGUCgAGCGC- -5'
24057 5' -55.7 NC_005262.1 + 26019 0.73 0.339985
Target:  5'- cGAGGG-CACguacuacGcCCAGCAGCUCGCc -3'
miRNA:   3'- uCUUCCaGUGa------CuGGUCGUCGAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.