miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24058 3' -53.4 NC_005262.1 + 46265 0.66 0.874213
Target:  5'- uGCGugaucGCCUCGGccgucGCGUCGGAgauCGCGuugaGGCg -3'
miRNA:   3'- -CGU-----UGGAGCCu----CGCAGCUU---GCGC----UUG- -5'
24058 3' -53.4 NC_005262.1 + 11778 0.66 0.874213
Target:  5'- uCGGCCUCGGuuccgaaGUUGcGCGCGAAg -3'
miRNA:   3'- cGUUGGAGCCucg----CAGCuUGCGCUUg -5'
24058 3' -53.4 NC_005262.1 + 24754 0.66 0.874213
Target:  5'- uGCGGCCgaagUGGAuucagcaccGCGgCGAGCcggGCGAGCa -3'
miRNA:   3'- -CGUUGGa---GCCU---------CGCaGCUUG---CGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 33907 0.66 0.866328
Target:  5'- gGCGGCCcgaUCGGuAGCGgcggugcCGAGCucgcgGCGGGCa -3'
miRNA:   3'- -CGUUGG---AGCC-UCGCa------GCUUG-----CGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 5500 0.66 0.866328
Target:  5'- -aGACC-CGGcucGCGUCcaaGAACGCGGAa -3'
miRNA:   3'- cgUUGGaGCCu--CGCAG---CUUGCGCUUg -5'
24058 3' -53.4 NC_005262.1 + 35206 0.66 0.86148
Target:  5'- cCAGCCUacguccgcaaggaugCGGAG-GUCGGcgGCGCGAucgGCa -3'
miRNA:   3'- cGUUGGA---------------GCCUCgCAGCU--UGCGCU---UG- -5'
24058 3' -53.4 NC_005262.1 + 44993 0.66 0.858201
Target:  5'- aGCAGuCCgcgCGGcaGGCGgCGGACGCcAACa -3'
miRNA:   3'- -CGUU-GGa--GCC--UCGCaGCUUGCGcUUG- -5'
24058 3' -53.4 NC_005262.1 + 17173 0.66 0.858201
Target:  5'- cGCGGCC-CGccGCGUCGAcggGCGCGc-- -3'
miRNA:   3'- -CGUUGGaGCcuCGCAGCU---UGCGCuug -5'
24058 3' -53.4 NC_005262.1 + 48632 0.66 0.858201
Target:  5'- aGCGGCC-CGGcuccuGCGcaUCGAgACGCGAuuGCa -3'
miRNA:   3'- -CGUUGGaGCCu----CGC--AGCU-UGCGCU--UG- -5'
24058 3' -53.4 NC_005262.1 + 15609 0.66 0.858201
Target:  5'- cGCGugCggcaGGAGCGcaUCGAGgCGCGGc- -3'
miRNA:   3'- -CGUugGag--CCUCGC--AGCUU-GCGCUug -5'
24058 3' -53.4 NC_005262.1 + 17518 0.66 0.858201
Target:  5'- gGCAGCCUgacgacgaugcaCGGGcacGCgGUCGcGCGCGAGg -3'
miRNA:   3'- -CGUUGGA------------GCCU---CG-CAGCuUGCGCUUg -5'
24058 3' -53.4 NC_005262.1 + 12242 0.66 0.849841
Target:  5'- -gAGCaugCGGucGCGUCGAugGuCGGGCa -3'
miRNA:   3'- cgUUGga-GCCu-CGCAGCUugC-GCUUG- -5'
24058 3' -53.4 NC_005262.1 + 55736 0.66 0.849841
Target:  5'- gGCGugC-CGGAcGCGgccaCGAGCGCGcGGCc -3'
miRNA:   3'- -CGUugGaGCCU-CGCa---GCUUGCGC-UUG- -5'
24058 3' -53.4 NC_005262.1 + 28231 0.66 0.849841
Target:  5'- cGC-GCgCUCGGGGaa--GAugGCGAGCa -3'
miRNA:   3'- -CGuUG-GAGCCUCgcagCUugCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 26145 0.66 0.849841
Target:  5'- gGCAAUCUgGGugcuccaacGCGUCGAgcacgaguggcGCGCGAu- -3'
miRNA:   3'- -CGUUGGAgCCu--------CGCAGCU-----------UGCGCUug -5'
24058 3' -53.4 NC_005262.1 + 27638 0.66 0.848992
Target:  5'- gGCGuCCUcgcCGGGGCugagcucgcccucGUCGGugcGCGCGGGCa -3'
miRNA:   3'- -CGUuGGA---GCCUCG-------------CAGCU---UGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 50415 0.66 0.841254
Target:  5'- aGC-GCCgCGGAGCG-CGAGggcCGCGuGCa -3'
miRNA:   3'- -CGuUGGaGCCUCGCaGCUU---GCGCuUG- -5'
24058 3' -53.4 NC_005262.1 + 7527 0.66 0.841254
Target:  5'- gGCAGgUUCGGcggcGCGUCG-GCGCGcucGACg -3'
miRNA:   3'- -CGUUgGAGCCu---CGCAGCuUGCGC---UUG- -5'
24058 3' -53.4 NC_005262.1 + 61813 0.66 0.841254
Target:  5'- cGCAuGCCUCGGcGC-UCGAguACcCGAACa -3'
miRNA:   3'- -CGU-UGGAGCCuCGcAGCU--UGcGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 50597 0.66 0.840384
Target:  5'- uCAACC-CGGuAGCG-CGAGCGCuucggcuGAACc -3'
miRNA:   3'- cGUUGGaGCC-UCGCaGCUUGCG-------CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.