Results 1 - 20 of 91 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 26145 | 0.66 | 0.849841 |
Target: 5'- gGCAAUCUgGGugcuccaacGCGUCGAgcacgaguggcGCGCGAu- -3' miRNA: 3'- -CGUUGGAgCCu--------CGCAGCU-----------UGCGCUug -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 27638 | 0.66 | 0.848992 |
Target: 5'- gGCGuCCUcgcCGGGGCugagcucgcccucGUCGGugcGCGCGGGCa -3' miRNA: 3'- -CGUuGGA---GCCUCG-------------CAGCU---UGCGCUUG- -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 46265 | 0.66 | 0.874213 |
Target: 5'- uGCGugaucGCCUCGGccgucGCGUCGGAgauCGCGuugaGGCg -3' miRNA: 3'- -CGU-----UGGAGCCu----CGCAGCUU---GCGC----UUG- -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 12242 | 0.66 | 0.849841 |
Target: 5'- -gAGCaugCGGucGCGUCGAugGuCGGGCa -3' miRNA: 3'- cgUUGga-GCCu-CGCAGCUugC-GCUUG- -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 50597 | 0.66 | 0.840384 |
Target: 5'- uCAACC-CGGuAGCG-CGAGCGCuucggcuGAACc -3' miRNA: 3'- cGUUGGaGCC-UCGCaGCUUGCG-------CUUG- -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 50415 | 0.66 | 0.841254 |
Target: 5'- aGC-GCCgCGGAGCG-CGAGggcCGCGuGCa -3' miRNA: 3'- -CGuUGGaGCCUCGCaGCUU---GCGCuUG- -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 7527 | 0.66 | 0.841254 |
Target: 5'- gGCAGgUUCGGcggcGCGUCG-GCGCGcucGACg -3' miRNA: 3'- -CGUUgGAGCCu---CGCAGCuUGCGC---UUG- -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 61813 | 0.66 | 0.841254 |
Target: 5'- cGCAuGCCUCGGcGC-UCGAguACcCGAACa -3' miRNA: 3'- -CGU-UGGAGCCuCGcAGCU--UGcGCUUG- -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 15609 | 0.66 | 0.858201 |
Target: 5'- cGCGugCggcaGGAGCGcaUCGAGgCGCGGc- -3' miRNA: 3'- -CGUugGag--CCUCGC--AGCUU-GCGCUug -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 48632 | 0.66 | 0.858201 |
Target: 5'- aGCGGCC-CGGcuccuGCGcaUCGAgACGCGAuuGCa -3' miRNA: 3'- -CGUUGGaGCCu----CGC--AGCU-UGCGCU--UG- -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 24754 | 0.66 | 0.874213 |
Target: 5'- uGCGGCCgaagUGGAuucagcaccGCGgCGAGCcggGCGAGCa -3' miRNA: 3'- -CGUUGGa---GCCU---------CGCaGCUUG---CGCUUG- -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 17518 | 0.66 | 0.858201 |
Target: 5'- gGCAGCCUgacgacgaugcaCGGGcacGCgGUCGcGCGCGAGg -3' miRNA: 3'- -CGUUGGA------------GCCU---CG-CAGCuUGCGCUUg -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 44993 | 0.66 | 0.858201 |
Target: 5'- aGCAGuCCgcgCGGcaGGCGgCGGACGCcAACa -3' miRNA: 3'- -CGUU-GGa--GCC--UCGCaGCUUGCGcUUG- -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 33907 | 0.66 | 0.866328 |
Target: 5'- gGCGGCCcgaUCGGuAGCGgcggugcCGAGCucgcgGCGGGCa -3' miRNA: 3'- -CGUUGG---AGCC-UCGCa------GCUUG-----CGCUUG- -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 55736 | 0.66 | 0.849841 |
Target: 5'- gGCGugC-CGGAcGCGgccaCGAGCGCGcGGCc -3' miRNA: 3'- -CGUugGaGCCU-CGCa---GCUUGCGC-UUG- -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 28231 | 0.66 | 0.849841 |
Target: 5'- cGC-GCgCUCGGGGaa--GAugGCGAGCa -3' miRNA: 3'- -CGuUG-GAGCCUCgcagCUugCGCUUG- -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 11778 | 0.66 | 0.874213 |
Target: 5'- uCGGCCUCGGuuccgaaGUUGcGCGCGAAg -3' miRNA: 3'- cGUUGGAGCCucg----CAGCuUGCGCUUg -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 17173 | 0.66 | 0.858201 |
Target: 5'- cGCGGCC-CGccGCGUCGAcggGCGCGc-- -3' miRNA: 3'- -CGUUGGaGCcuCGCAGCU---UGCGCuug -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 5500 | 0.66 | 0.866328 |
Target: 5'- -aGACC-CGGcucGCGUCcaaGAACGCGGAa -3' miRNA: 3'- cgUUGGaGCCu--CGCAG---CUUGCGCUUg -5' |
|||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 35206 | 0.66 | 0.86148 |
Target: 5'- cCAGCCUacguccgcaaggaugCGGAG-GUCGGcgGCGCGAucgGCa -3' miRNA: 3'- cGUUGGA---------------GCCUCgCAGCU--UGCGCU---UG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home