miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24058 3' -53.4 NC_005262.1 + 45261 1.11 0.00141
Target:  5'- gGCAACCUCGGAGCGUCGAACGCGAACu -3'
miRNA:   3'- -CGUUGGAGCCUCGCAGCUUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 49854 0.79 0.204748
Target:  5'- gGCAGCggcCGGAGCcUCGGGCGCGGGCg -3'
miRNA:   3'- -CGUUGga-GCCUCGcAGCUUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 22303 0.79 0.215846
Target:  5'- cGCGGCCgu-GAGCuuGUCGAGCGCGAGCc -3'
miRNA:   3'- -CGUUGGagcCUCG--CAGCUUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 61551 0.76 0.307715
Target:  5'- gGCGAUCUCGGcgauccgggacgaGGCGgugacggUGAACGCGGACa -3'
miRNA:   3'- -CGUUGGAGCC-------------UCGCa------GCUUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 51463 0.76 0.308474
Target:  5'- cGCGGCCUUGGccGGCGUCGcggacGGCGCGGu- -3'
miRNA:   3'- -CGUUGGAGCC--UCGCAGC-----UUGCGCUug -5'
24058 3' -53.4 NC_005262.1 + 11481 0.74 0.400552
Target:  5'- cGCGGCUUCGGcGUGgagcCGcGCGCGAACg -3'
miRNA:   3'- -CGUUGGAGCCuCGCa---GCuUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 29498 0.73 0.457632
Target:  5'- uGCugcuCCUC-GAGCGUCGcgauCGCGAGCg -3'
miRNA:   3'- -CGuu--GGAGcCUCGCAGCuu--GCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 17319 0.73 0.467566
Target:  5'- aGCAgACCgcaaGGAGCG-CGAGCGCGucGCg -3'
miRNA:   3'- -CGU-UGGag--CCUCGCaGCUUGCGCu-UG- -5'
24058 3' -53.4 NC_005262.1 + 10568 0.73 0.498008
Target:  5'- cGCAGCCgcagcguaccgCGGAGCaG-CGcGGCGCGAGCg -3'
miRNA:   3'- -CGUUGGa----------GCCUCG-CaGC-UUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 28897 0.73 0.498008
Target:  5'- cGCGAgCUCGaGAuGCG-CGGGCGCGAGg -3'
miRNA:   3'- -CGUUgGAGC-CU-CGCaGCUUGCGCUUg -5'
24058 3' -53.4 NC_005262.1 + 49222 0.72 0.518786
Target:  5'- gGCGGCCUCGGcGGCGcgcagucCGcGCGCGAGg -3'
miRNA:   3'- -CGUUGGAGCC-UCGCa------GCuUGCGCUUg -5'
24058 3' -53.4 NC_005262.1 + 33957 0.72 0.550566
Target:  5'- aGCGAUCcCGGAacgcgGCGUCGAGCuGCuGGACg -3'
miRNA:   3'- -CGUUGGaGCCU-----CGCAGCUUG-CG-CUUG- -5'
24058 3' -53.4 NC_005262.1 + 51020 0.72 0.550566
Target:  5'- gGCGACCgcgcCGuGAucGUGUCGAACGaCGGGCa -3'
miRNA:   3'- -CGUUGGa---GC-CU--CGCAGCUUGC-GCUUG- -5'
24058 3' -53.4 NC_005262.1 + 56750 0.71 0.561296
Target:  5'- gGCcGCCgCGcuGGCGUCGGGCGaCGAGCg -3'
miRNA:   3'- -CGuUGGaGCc-UCGCAGCUUGC-GCUUG- -5'
24058 3' -53.4 NC_005262.1 + 30634 0.71 0.582917
Target:  5'- cCGACgCUCGGcaaggugcccGCGUCGGacaACGCGGACa -3'
miRNA:   3'- cGUUG-GAGCCu---------CGCAGCU---UGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 47524 0.71 0.603607
Target:  5'- cGCGACCUUGuucugcugguucuGGGCGUCGAgcuugcuuuucuGCGCGucGCg -3'
miRNA:   3'- -CGUUGGAGC-------------CUCGCAGCU------------UGCGCu-UG- -5'
24058 3' -53.4 NC_005262.1 + 8372 0.7 0.626575
Target:  5'- gGCcGCCUCGcGAGCG----ACGCGGGCa -3'
miRNA:   3'- -CGuUGGAGC-CUCGCagcuUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 57466 0.7 0.626575
Target:  5'- gGCGACgaUGGAG-GUCGAGgGCGAGa -3'
miRNA:   3'- -CGUUGgaGCCUCgCAGCUUgCGCUUg -5'
24058 3' -53.4 NC_005262.1 + 51416 0.7 0.626575
Target:  5'- cGCGugCUCGGcGGCGcgcgCGAGgGCGAu- -3'
miRNA:   3'- -CGUugGAGCC-UCGCa---GCUUgCGCUug -5'
24058 3' -53.4 NC_005262.1 + 2788 0.7 0.626575
Target:  5'- cGCAACgacaUUGaGGCGcUCGAGCGUGAGCu -3'
miRNA:   3'- -CGUUGg---AGCcUCGC-AGCUUGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.