miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24058 3' -53.4 NC_005262.1 + 46973 0.67 0.832451
Target:  5'- cGCAAUCUCGGccuGUGggCGAaggcauggcGCGCGAcGCa -3'
miRNA:   3'- -CGUUGGAGCCu--CGCa-GCU---------UGCGCU-UG- -5'
24058 3' -53.4 NC_005262.1 + 18151 0.67 0.82887
Target:  5'- uCAACCg-GGAGCG-CGugcccgccugaucGCGCGAGCg -3'
miRNA:   3'- cGUUGGagCCUCGCaGCu------------UGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 55236 0.67 0.827068
Target:  5'- cGCGGCCggguagagcucgaGGAauucGCGUgCGAacuGCGCGAGCa -3'
miRNA:   3'- -CGUUGGag-----------CCU----CGCA-GCU---UGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 8270 0.67 0.823438
Target:  5'- aGCGGCCgaGGAagcugcccGCGUCGcuCGCGAGg -3'
miRNA:   3'- -CGUUGGagCCU--------CGCAGCuuGCGCUUg -5'
24058 3' -53.4 NC_005262.1 + 5600 0.67 0.823438
Target:  5'- aGUAcACCgCGGcGGCGUCGAuguuCGCGAc- -3'
miRNA:   3'- -CGU-UGGaGCC-UCGCAGCUu---GCGCUug -5'
24058 3' -53.4 NC_005262.1 + 22493 0.67 0.823438
Target:  5'- gGCGGCgCUCGaucAGUG-CGAACGCGGGa -3'
miRNA:   3'- -CGUUG-GAGCc--UCGCaGCUUGCGCUUg -5'
24058 3' -53.4 NC_005262.1 + 2094 0.67 0.823438
Target:  5'- aGCAGCgC-CGuGGCGUgGAGCauGCGAGCa -3'
miRNA:   3'- -CGUUG-GaGCcUCGCAgCUUG--CGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 16478 0.67 0.820695
Target:  5'- gGCGGCCggcCGGGGCGggUucaaaacugguugcCGAACGCGGcgGCg -3'
miRNA:   3'- -CGUUGGa--GCCUCGC--A--------------GCUUGCGCU--UG- -5'
24058 3' -53.4 NC_005262.1 + 61621 0.67 0.814227
Target:  5'- cGCGcgcGCCUgaaGGAGC-UCGAGgGCGAGg -3'
miRNA:   3'- -CGU---UGGAg--CCUCGcAGCUUgCGCUUg -5'
24058 3' -53.4 NC_005262.1 + 32900 0.67 0.814227
Target:  5'- uCGGCCaagcCGGcGGCGUCGcACGCGcGACg -3'
miRNA:   3'- cGUUGGa---GCC-UCGCAGCuUGCGC-UUG- -5'
24058 3' -53.4 NC_005262.1 + 44161 0.67 0.814227
Target:  5'- cGCGAUCgggcaGGAGCG-CGGcgGCGAGCu -3'
miRNA:   3'- -CGUUGGag---CCUCGCaGCUugCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 5708 0.67 0.804826
Target:  5'- cGCAA-CUCGG-GCGagGu-CGCGAACa -3'
miRNA:   3'- -CGUUgGAGCCuCGCagCuuGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 21514 0.67 0.795246
Target:  5'- cCAGCUcgCGGA-CGUCGGccguCGCGAGCu -3'
miRNA:   3'- cGUUGGa-GCCUcGCAGCUu---GCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 46095 0.67 0.795246
Target:  5'- cGCGacGCCUUGc-GCGUgcagGAACGCGAACa -3'
miRNA:   3'- -CGU--UGGAGCcuCGCAg---CUUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 50323 0.67 0.795246
Target:  5'- uCGAUCUCGGccgacaccuugcGGCGuUCGGuCGUGAGCa -3'
miRNA:   3'- cGUUGGAGCC------------UCGC-AGCUuGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 11582 0.67 0.795246
Target:  5'- uGCAGCCgagcUCGGcgacGCGgcccaugugcUCGcGCGCGAGCg -3'
miRNA:   3'- -CGUUGG----AGCCu---CGC----------AGCuUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 25625 0.67 0.795246
Target:  5'- uGCcGCCgcgcaCGGA-CGUCGcGACGCGGAUg -3'
miRNA:   3'- -CGuUGGa----GCCUcGCAGC-UUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 43864 0.67 0.795246
Target:  5'- gGCAggACCUCGGcGCGaUCGcGCGCa--- -3'
miRNA:   3'- -CGU--UGGAGCCuCGC-AGCuUGCGcuug -5'
24058 3' -53.4 NC_005262.1 + 61298 0.67 0.785498
Target:  5'- cCAGCCUCGcGGgGUCGGAUaUGGGCa -3'
miRNA:   3'- cGUUGGAGCcUCgCAGCUUGcGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 16613 0.67 0.785498
Target:  5'- aGCAGCCgCGuuucGAGCugggcgauaucGUCGugcuGCGCGAGCa -3'
miRNA:   3'- -CGUUGGaGC----CUCG-----------CAGCu---UGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.