miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24058 3' -53.4 NC_005262.1 + 988 0.68 0.745037
Target:  5'- gGCGACCUgCGGGGCGgggCGGuguaGAGCu -3'
miRNA:   3'- -CGUUGGA-GCCUCGCa--GCUugcgCUUG- -5'
24058 3' -53.4 NC_005262.1 + 1134 0.69 0.701691
Target:  5'- uGCGGCCgcugCGG-GCuUCGAugcugccGCGCGGGCu -3'
miRNA:   3'- -CGUUGGa---GCCuCGcAGCU-------UGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 1732 0.68 0.765539
Target:  5'- cGCuACCUCaGuGCGagGGGCGCGGGa -3'
miRNA:   3'- -CGuUGGAGcCuCGCagCUUGCGCUUg -5'
24058 3' -53.4 NC_005262.1 + 2094 0.67 0.823438
Target:  5'- aGCAGCgC-CGuGGCGUgGAGCauGCGAGCa -3'
miRNA:   3'- -CGUUG-GaGCcUCGCAgCUUG--CGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 2788 0.7 0.626575
Target:  5'- cGCAACgacaUUGaGGCGcUCGAGCGUGAGCu -3'
miRNA:   3'- -CGUUGg---AGCcUCGC-AGCUUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 4566 0.68 0.745037
Target:  5'- cGCAucucgcGCCagCGGcGGCGcugcUCGGGCGUGAGCg -3'
miRNA:   3'- -CGU------UGGa-GCC-UCGC----AGCUUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 5180 0.69 0.713463
Target:  5'- cCGGCgUCGcGGGCG-CGGGCGCGGccgGCg -3'
miRNA:   3'- cGUUGgAGC-CUCGCaGCUUGCGCU---UG- -5'
24058 3' -53.4 NC_005262.1 + 5500 0.66 0.866328
Target:  5'- -aGACC-CGGcucGCGUCcaaGAACGCGGAa -3'
miRNA:   3'- cgUUGGaGCCu--CGCAG---CUUGCGCUUg -5'
24058 3' -53.4 NC_005262.1 + 5600 0.67 0.823438
Target:  5'- aGUAcACCgCGGcGGCGUCGAuguuCGCGAc- -3'
miRNA:   3'- -CGU-UGGaGCC-UCGCAGCUu---GCGCUug -5'
24058 3' -53.4 NC_005262.1 + 5708 0.67 0.804826
Target:  5'- cGCAA-CUCGG-GCGagGu-CGCGAACa -3'
miRNA:   3'- -CGUUgGAGCCuCGCagCuuGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 7527 0.66 0.841254
Target:  5'- gGCAGgUUCGGcggcGCGUCG-GCGCGcucGACg -3'
miRNA:   3'- -CGUUgGAGCCu---CGCAGCuUGCGC---UUG- -5'
24058 3' -53.4 NC_005262.1 + 8270 0.67 0.823438
Target:  5'- aGCGGCCgaGGAagcugcccGCGUCGcuCGCGAGg -3'
miRNA:   3'- -CGUUGGagCCU--------CGCAGCuuGCGCUUg -5'
24058 3' -53.4 NC_005262.1 + 8372 0.7 0.626575
Target:  5'- gGCcGCCUCGcGAGCG----ACGCGGGCa -3'
miRNA:   3'- -CGuUGGAGC-CUCGCagcuUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 9790 0.69 0.691998
Target:  5'- aGCAucGCCUCGu--CGUCGAACGCcAACu -3'
miRNA:   3'- -CGU--UGGAGCcucGCAGCUUGCGcUUG- -5'
24058 3' -53.4 NC_005262.1 + 10568 0.73 0.498008
Target:  5'- cGCAGCCgcagcguaccgCGGAGCaG-CGcGGCGCGAGCg -3'
miRNA:   3'- -CGUUGGa----------GCCUCG-CaGC-UUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 11066 0.7 0.637525
Target:  5'- cGCGACCggcguuccCGGcGCGcCGAacaGCGCGAAUg -3'
miRNA:   3'- -CGUUGGa-------GCCuCGCaGCU---UGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 11481 0.74 0.400552
Target:  5'- cGCGGCUUCGGcGUGgagcCGcGCGCGAACg -3'
miRNA:   3'- -CGUUGGAGCCuCGCa---GCuUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 11582 0.67 0.795246
Target:  5'- uGCAGCCgagcUCGGcgacGCGgcccaugugcUCGcGCGCGAGCg -3'
miRNA:   3'- -CGUUGG----AGCCu---CGC----------AGCuUGCGCUUG- -5'
24058 3' -53.4 NC_005262.1 + 11778 0.66 0.874213
Target:  5'- uCGGCCUCGGuuccgaaGUUGcGCGCGAAg -3'
miRNA:   3'- cGUUGGAGCCucg----CAGCuUGCGCUUg -5'
24058 3' -53.4 NC_005262.1 + 12242 0.66 0.849841
Target:  5'- -gAGCaugCGGucGCGUCGAugGuCGGGCa -3'
miRNA:   3'- cgUUGga-GCCu-CGCAGCUugC-GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.