Results 1 - 20 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24058 | 3' | -53.4 | NC_005262.1 | + | 49696 | 0.68 | 0.745037 |
Target: 5'- cGCAACCUgaaccgcgaCGGcGUGcCGGGCGgCGAACc -3' miRNA: 3'- -CGUUGGA---------GCCuCGCaGCUUGC-GCUUG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 12838 | 0.7 | 0.64847 |
Target: 5'- cGCGGCCUCGcGGGaacCGUCGuGC-CGAGCu -3' miRNA: 3'- -CGUUGGAGC-CUC---GCAGCuUGcGCUUG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 47396 | 0.7 | 0.670305 |
Target: 5'- gGCGACCUC-GAGCG-CGAcGCGCaGAAa -3' miRNA: 3'- -CGUUGGAGcCUCGCaGCU-UGCG-CUUg -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 9790 | 0.69 | 0.691998 |
Target: 5'- aGCAucGCCUCGu--CGUCGAACGCcAACu -3' miRNA: 3'- -CGU--UGGAGCcucGCAGCUUGCGcUUG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 1134 | 0.69 | 0.701691 |
Target: 5'- uGCGGCCgcugCGG-GCuUCGAugcugccGCGCGGGCu -3' miRNA: 3'- -CGUUGGa---GCCuCGcAGCU-------UGCGCUUG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 15144 | 0.69 | 0.702765 |
Target: 5'- cGCGGCC----GGCGUCGAgucgGCGCGGAUg -3' miRNA: 3'- -CGUUGGagccUCGCAGCU----UGCGCUUG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 5180 | 0.69 | 0.713463 |
Target: 5'- cCGGCgUCGcGGGCG-CGGGCGCGGccgGCg -3' miRNA: 3'- cGUUGgAGC-CUCGCaGCUUGCGCU---UG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 21676 | 0.69 | 0.724082 |
Target: 5'- cGCAACCUgagCGGcGGCGcCGcgcugcuguACGCGGGCa -3' miRNA: 3'- -CGUUGGA---GCC-UCGCaGCu--------UGCGCUUG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 988 | 0.68 | 0.745037 |
Target: 5'- gGCGACCUgCGGGGCGgggCGGuguaGAGCu -3' miRNA: 3'- -CGUUGGA-GCCUCGCa--GCUugcgCUUG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 43572 | 0.7 | 0.637525 |
Target: 5'- cGCAgACgUgGGAG-GUCGAggucaGCGCGAACg -3' miRNA: 3'- -CGU-UGgAgCCUCgCAGCU-----UGCGCUUG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 57466 | 0.7 | 0.626575 |
Target: 5'- gGCGACgaUGGAG-GUCGAGgGCGAGa -3' miRNA: 3'- -CGUUGgaGCCUCgCAGCUUgCGCUUg -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 51416 | 0.7 | 0.626575 |
Target: 5'- cGCGugCUCGGcGGCGcgcgCGAGgGCGAu- -3' miRNA: 3'- -CGUugGAGCC-UCGCa---GCUUgCGCUug -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 61551 | 0.76 | 0.307715 |
Target: 5'- gGCGAUCUCGGcgauccgggacgaGGCGgugacggUGAACGCGGACa -3' miRNA: 3'- -CGUUGGAGCC-------------UCGCa------GCUUGCGCUUG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 17319 | 0.73 | 0.467566 |
Target: 5'- aGCAgACCgcaaGGAGCG-CGAGCGCGucGCg -3' miRNA: 3'- -CGU-UGGag--CCUCGCaGCUUGCGCu-UG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 10568 | 0.73 | 0.498008 |
Target: 5'- cGCAGCCgcagcguaccgCGGAGCaG-CGcGGCGCGAGCg -3' miRNA: 3'- -CGUUGGa----------GCCUCG-CaGC-UUGCGCUUG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 49222 | 0.72 | 0.518786 |
Target: 5'- gGCGGCCUCGGcGGCGcgcagucCGcGCGCGAGg -3' miRNA: 3'- -CGUUGGAGCC-UCGCa------GCuUGCGCUUg -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 33957 | 0.72 | 0.550566 |
Target: 5'- aGCGAUCcCGGAacgcgGCGUCGAGCuGCuGGACg -3' miRNA: 3'- -CGUUGGaGCCU-----CGCAGCUUG-CG-CUUG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 51020 | 0.72 | 0.550566 |
Target: 5'- gGCGACCgcgcCGuGAucGUGUCGAACGaCGGGCa -3' miRNA: 3'- -CGUUGGa---GC-CU--CGCAGCUUGC-GCUUG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 56750 | 0.71 | 0.561296 |
Target: 5'- gGCcGCCgCGcuGGCGUCGGGCGaCGAGCg -3' miRNA: 3'- -CGuUGGaGCc-UCGCAGCUUGC-GCUUG- -5' |
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24058 | 3' | -53.4 | NC_005262.1 | + | 30634 | 0.71 | 0.582917 |
Target: 5'- cCGACgCUCGGcaaggugcccGCGUCGGacaACGCGGACa -3' miRNA: 3'- cGUUG-GAGCCu---------CGCAGCU---UGCGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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