miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24058 5' -57 NC_005262.1 + 51036 0.66 0.671852
Target:  5'- uGCGUCGGCuucagcUCGgCGGCC--GGCa-- -3'
miRNA:   3'- -UGCAGCCGu-----AGCaGCCGGuuCCGaug -5'
24058 5' -57 NC_005262.1 + 52787 0.66 0.671852
Target:  5'- uCGUcCGGCGUCGgccggCGGCCuuccugcucGaGCUGCu -3'
miRNA:   3'- uGCA-GCCGUAGCa----GCCGGuu-------C-CGAUG- -5'
24058 5' -57 NC_005262.1 + 25372 0.66 0.670778
Target:  5'- cCGgugCGGCAucaucgcgcaggaUCGggagaCGGCCGAGGCg-- -3'
miRNA:   3'- uGCa--GCCGU-------------AGCa----GCCGGUUCCGaug -5'
24058 5' -57 NC_005262.1 + 37004 0.66 0.66109
Target:  5'- aACGUCGGCGagacggacaUCGgCGGCgGuucauGGCUGu -3'
miRNA:   3'- -UGCAGCCGU---------AGCaGCCGgUu----CCGAUg -5'
24058 5' -57 NC_005262.1 + 44700 0.66 0.66109
Target:  5'- aACGU-GGCAUCGcCGcGCgCGAGGaaaUGCa -3'
miRNA:   3'- -UGCAgCCGUAGCaGC-CG-GUUCCg--AUG- -5'
24058 5' -57 NC_005262.1 + 27870 0.66 0.650302
Target:  5'- gACGgCGGCAagG-CGGCCGAGcGCa-- -3'
miRNA:   3'- -UGCaGCCGUagCaGCCGGUUC-CGaug -5'
24058 5' -57 NC_005262.1 + 16962 0.66 0.650302
Target:  5'- uGCGgccCGGCG-CG-CGGCCGGGcGcCUGCa -3'
miRNA:   3'- -UGCa--GCCGUaGCaGCCGGUUC-C-GAUG- -5'
24058 5' -57 NC_005262.1 + 54202 0.66 0.639498
Target:  5'- gGCGagGGCGcCGUCGacGUCGAGGCgcaGCa -3'
miRNA:   3'- -UGCagCCGUaGCAGC--CGGUUCCGa--UG- -5'
24058 5' -57 NC_005262.1 + 3774 0.66 0.639498
Target:  5'- gGCGcCGGCAucaccgUCGUcaCGGCCAGcgacGGCcGCg -3'
miRNA:   3'- -UGCaGCCGU------AGCA--GCCGGUU----CCGaUG- -5'
24058 5' -57 NC_005262.1 + 51269 0.66 0.628687
Target:  5'- aGCGggccgCcGCGUCGUCGGCUGccuGCUGCg -3'
miRNA:   3'- -UGCa----GcCGUAGCAGCCGGUuc-CGAUG- -5'
24058 5' -57 NC_005262.1 + 35232 0.67 0.61788
Target:  5'- -gGUCGGCGgcgCGaUCGGCagcGGCUGg -3'
miRNA:   3'- ugCAGCCGUa--GC-AGCCGguuCCGAUg -5'
24058 5' -57 NC_005262.1 + 18002 0.67 0.61788
Target:  5'- gGCGUCGGCGcCGaUCGGCgGcucgccgaaaucGGGCggUGCu -3'
miRNA:   3'- -UGCAGCCGUaGC-AGCCGgU------------UCCG--AUG- -5'
24058 5' -57 NC_005262.1 + 52489 0.67 0.61788
Target:  5'- cGCGaUCGccuccaGCGUC-UCGGCCAgaAGGUUGCu -3'
miRNA:   3'- -UGC-AGC------CGUAGcAGCCGGU--UCCGAUG- -5'
24058 5' -57 NC_005262.1 + 17610 0.67 0.61788
Target:  5'- cGCGUgccCGuGCAUCGUC-GUCA-GGCUGCc -3'
miRNA:   3'- -UGCA---GC-CGUAGCAGcCGGUuCCGAUG- -5'
24058 5' -57 NC_005262.1 + 49866 0.67 0.6168
Target:  5'- gGCGUcCGGCG-CGgcagCGGCCGgagccucGGGCgcggGCg -3'
miRNA:   3'- -UGCA-GCCGUaGCa---GCCGGU-------UCCGa---UG- -5'
24058 5' -57 NC_005262.1 + 4790 0.67 0.59631
Target:  5'- cAUGUCGGgAUCGgagcCGGCCGcguAGcGCUGg -3'
miRNA:   3'- -UGCAGCCgUAGCa---GCCGGU---UC-CGAUg -5'
24058 5' -57 NC_005262.1 + 12562 0.67 0.59631
Target:  5'- cGCGgCGGCGcUCGUCGaGCUGcuGCUGCc -3'
miRNA:   3'- -UGCaGCCGU-AGCAGC-CGGUucCGAUG- -5'
24058 5' -57 NC_005262.1 + 13483 0.67 0.59631
Target:  5'- cGCGUCGcGCGcuacUCGcUGGCgAAGGCgaagGCg -3'
miRNA:   3'- -UGCAGC-CGU----AGCaGCCGgUUCCGa---UG- -5'
24058 5' -57 NC_005262.1 + 60128 0.67 0.59631
Target:  5'- gGCGcCaGCGUCG-CGGCgAAGGCauggGCg -3'
miRNA:   3'- -UGCaGcCGUAGCaGCCGgUUCCGa---UG- -5'
24058 5' -57 NC_005262.1 + 48168 0.67 0.59631
Target:  5'- cGCGUCGGCGccgggcggcUCGUCGcGgCAGGuGCgaccgACg -3'
miRNA:   3'- -UGCAGCCGU---------AGCAGC-CgGUUC-CGa----UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.