Results 41 - 54 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24058 | 5' | -57 | NC_005262.1 | + | 30150 | 0.71 | 0.386988 |
Target: 5'- gGCGUCGucgucgccggcaGCAUCGUCGGUCuugcccGCUGCu -3' miRNA: 3'- -UGCAGC------------CGUAGCAGCCGGuuc---CGAUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 29957 | 0.71 | 0.378238 |
Target: 5'- aGCGcCGGCGcuccUCGUCGGUC-AGGCcgGCc -3' miRNA: 3'- -UGCaGCCGU----AGCAGCCGGuUCCGa-UG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 45773 | 0.71 | 0.361142 |
Target: 5'- cCGaUCGGCAUCG-CGGCgaAGGGCgGCg -3' miRNA: 3'- uGC-AGCCGUAGCaGCCGg-UUCCGaUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 10620 | 0.71 | 0.386988 |
Target: 5'- cGCGUCGGCAUagcCGuuUCGGCCGcccccGcGCUGCu -3' miRNA: 3'- -UGCAGCCGUA---GC--AGCCGGUu----C-CGAUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 46641 | 0.72 | 0.320802 |
Target: 5'- uCGUgGGCGUCGcgggagcggCGGCCGgcgccgcgcuGGGCUGCu -3' miRNA: 3'- uGCAgCCGUAGCa--------GCCGGU----------UCCGAUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 22124 | 0.72 | 0.305638 |
Target: 5'- cACGUggcCGGCaAUCGUCuGGCCGccgcGGCUGCc -3' miRNA: 3'- -UGCA---GCCG-UAGCAG-CCGGUu---CCGAUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 51374 | 0.72 | 0.328593 |
Target: 5'- cCGUCcGCGaCGcCGGCCAAGGCcGCg -3' miRNA: 3'- uGCAGcCGUaGCaGCCGGUUCCGaUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 60844 | 0.73 | 0.291029 |
Target: 5'- cGCGaUCGGCGUggCGaUGGCCGAGGCaaUGCg -3' miRNA: 3'- -UGC-AGCCGUA--GCaGCCGGUUCCG--AUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 17483 | 0.73 | 0.288885 |
Target: 5'- aGCGucUCGGCAUUGUCGGCCGccgagucgaccggcAGGUUc- -3' miRNA: 3'- -UGC--AGCCGUAGCAGCCGGU--------------UCCGAug -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 39857 | 0.73 | 0.27015 |
Target: 5'- cGCGUCGGgAUgGUCGGCUGGcGGCUu- -3' miRNA: 3'- -UGCAGCCgUAgCAGCCGGUU-CCGAug -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 21334 | 0.74 | 0.238056 |
Target: 5'- cACGUCcaggaGGCgAUCGaggCGGCCAAGGCcGCg -3' miRNA: 3'- -UGCAG-----CCG-UAGCa--GCCGGUUCCGaUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 51907 | 0.77 | 0.164878 |
Target: 5'- gACGUCGGCcgcgcugaaGUCGUC-GCCGAGGCggUACg -3' miRNA: 3'- -UGCAGCCG---------UAGCAGcCGGUUCCG--AUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 11261 | 0.77 | 0.160078 |
Target: 5'- cACGgCGGCGUCGUCGGCguugucgCAGGGCcGCc -3' miRNA: 3'- -UGCaGCCGUAGCAGCCG-------GUUCCGaUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 45297 | 1.1 | 0.000718 |
Target: 5'- aACGUCGGCAUCGUCGGCCAAGGCUACa -3' miRNA: 3'- -UGCAGCCGUAGCAGCCGGUUCCGAUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home