Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24058 | 5' | -57 | NC_005262.1 | + | 52824 | 0.69 | 0.451815 |
Target: 5'- gGCGcUCGGCGag--CGGCUgAAGGCUGCg -3' miRNA: 3'- -UGC-AGCCGUagcaGCCGG-UUCCGAUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 56732 | 0.68 | 0.531508 |
Target: 5'- gGCGUCGGCGuUCGacaUGGCCGccgcgcuggcgucGGGCgACg -3' miRNA: 3'- -UGCAGCCGU-AGCa--GCCGGU-------------UCCGaUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 2169 | 0.68 | 0.553584 |
Target: 5'- aGCG-CGGCuAUUGUCGGac--GGCUGCg -3' miRNA: 3'- -UGCaGCCG-UAGCAGCCgguuCCGAUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 30237 | 0.68 | 0.501571 |
Target: 5'- cGCGUCGGCAUcCGcCGGCgCuucGGCg-- -3' miRNA: 3'- -UGCAGCCGUA-GCaGCCG-Guu-CCGaug -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 54586 | 0.68 | 0.543035 |
Target: 5'- gAUGUCGGU--CGggcccagCGGCUucGGCUGCa -3' miRNA: 3'- -UGCAGCCGuaGCa------GCCGGuuCCGAUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 26631 | 0.68 | 0.511815 |
Target: 5'- cGCGUCGGCcgcuUCGgagUGGCCGccggucuugucGGGCUc- -3' miRNA: 3'- -UGCAGCCGu---AGCa--GCCGGU-----------UCCGAug -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 38027 | 0.67 | 0.574856 |
Target: 5'- gGCGUUGGCGUCG-CGGuCCAuGcGCg-- -3' miRNA: 3'- -UGCAGCCGUAGCaGCC-GGUuC-CGaug -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 31139 | 0.67 | 0.564194 |
Target: 5'- cGCGUCGGCGUCGgUCaGCaccagcAGGCggUACu -3' miRNA: 3'- -UGCAGCCGUAGC-AGcCGgu----UCCG--AUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 49866 | 0.67 | 0.6168 |
Target: 5'- gGCGUcCGGCG-CGgcagCGGCCGgagccucGGGCgcggGCg -3' miRNA: 3'- -UGCA-GCCGUaGCa---GCCGGU-------UCCGa---UG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 6603 | 0.67 | 0.56313 |
Target: 5'- aGCGUgaCGGCGagGUCGGCgCGcugaucgucgagcGGGUUGCg -3' miRNA: 3'- -UGCA--GCCGUagCAGCCG-GU-------------UCCGAUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 48168 | 0.67 | 0.59631 |
Target: 5'- cGCGUCGGCGccgggcggcUCGUCGcGgCAGGuGCgaccgACg -3' miRNA: 3'- -UGCAGCCGU---------AGCAGC-CgGUUC-CGa----UG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 35232 | 0.67 | 0.61788 |
Target: 5'- -gGUCGGCGgcgCGaUCGGCagcGGCUGg -3' miRNA: 3'- ugCAGCCGUa--GC-AGCCGguuCCGAUg -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 60128 | 0.67 | 0.59631 |
Target: 5'- gGCGcCaGCGUCG-CGGCgAAGGCauggGCg -3' miRNA: 3'- -UGCaGcCGUAGCaGCCGgUUCCGa---UG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 13483 | 0.67 | 0.59631 |
Target: 5'- cGCGUCGcGCGcuacUCGcUGGCgAAGGCgaagGCg -3' miRNA: 3'- -UGCAGC-CGU----AGCaGCCGgUUCCGa---UG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 32889 | 0.67 | 0.574856 |
Target: 5'- cGCGUCGaa--CGUCGGCCAAgccGGCgGCg -3' miRNA: 3'- -UGCAGCcguaGCAGCCGGUU---CCGaUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 19247 | 0.67 | 0.574856 |
Target: 5'- cGCGUUcaGGCggucgauguaGUCGcCGGCCAGGGUUcugACg -3' miRNA: 3'- -UGCAG--CCG----------UAGCaGCCGGUUCCGA---UG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 12721 | 0.67 | 0.570585 |
Target: 5'- gGCGUCccgccggagcaccGCGUCaUCGGUCAGuGGCUGCg -3' miRNA: 3'- -UGCAGc------------CGUAGcAGCCGGUU-CCGAUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 4790 | 0.67 | 0.59631 |
Target: 5'- cAUGUCGGgAUCGgagcCGGCCGcguAGcGCUGg -3' miRNA: 3'- -UGCAGCCgUAGCa---GCCGGU---UC-CGAUg -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 32829 | 0.67 | 0.564194 |
Target: 5'- cAUGUcCGGCGaCGUCGGCgaCAAGGUUuCg -3' miRNA: 3'- -UGCA-GCCGUaGCAGCCG--GUUCCGAuG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 35714 | 0.67 | 0.558882 |
Target: 5'- gGCGUCGGCGggacggccacgcugaUCcucgcauggcacuaCGGCCAAGGCgGCa -3' miRNA: 3'- -UGCAGCCGU---------------AGca------------GCCGGUUCCGaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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