miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24058 5' -57 NC_005262.1 + 45297 1.1 0.000718
Target:  5'- aACGUCGGCAUCGUCGGCCAAGGCUACa -3'
miRNA:   3'- -UGCAGCCGUAGCAGCCGGUUCCGAUG- -5'
24058 5' -57 NC_005262.1 + 11261 0.77 0.160078
Target:  5'- cACGgCGGCGUCGUCGGCguugucgCAGGGCcGCc -3'
miRNA:   3'- -UGCaGCCGUAGCAGCCG-------GUUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 51907 0.77 0.164878
Target:  5'- gACGUCGGCcgcgcugaaGUCGUC-GCCGAGGCggUACg -3'
miRNA:   3'- -UGCAGCCG---------UAGCAGcCGGUUCCG--AUG- -5'
24058 5' -57 NC_005262.1 + 21334 0.74 0.238056
Target:  5'- cACGUCcaggaGGCgAUCGaggCGGCCAAGGCcGCg -3'
miRNA:   3'- -UGCAG-----CCG-UAGCa--GCCGGUUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 39857 0.73 0.27015
Target:  5'- cGCGUCGGgAUgGUCGGCUGGcGGCUu- -3'
miRNA:   3'- -UGCAGCCgUAgCAGCCGGUU-CCGAug -5'
24058 5' -57 NC_005262.1 + 17483 0.73 0.288885
Target:  5'- aGCGucUCGGCAUUGUCGGCCGccgagucgaccggcAGGUUc- -3'
miRNA:   3'- -UGC--AGCCGUAGCAGCCGGU--------------UCCGAug -5'
24058 5' -57 NC_005262.1 + 60844 0.73 0.291029
Target:  5'- cGCGaUCGGCGUggCGaUGGCCGAGGCaaUGCg -3'
miRNA:   3'- -UGC-AGCCGUA--GCaGCCGGUUCCG--AUG- -5'
24058 5' -57 NC_005262.1 + 22124 0.72 0.305638
Target:  5'- cACGUggcCGGCaAUCGUCuGGCCGccgcGGCUGCc -3'
miRNA:   3'- -UGCA---GCCG-UAGCAG-CCGGUu---CCGAUG- -5'
24058 5' -57 NC_005262.1 + 46641 0.72 0.320802
Target:  5'- uCGUgGGCGUCGcgggagcggCGGCCGgcgccgcgcuGGGCUGCu -3'
miRNA:   3'- uGCAgCCGUAGCa--------GCCGGU----------UCCGAUG- -5'
24058 5' -57 NC_005262.1 + 51374 0.72 0.328593
Target:  5'- cCGUCcGCGaCGcCGGCCAAGGCcGCg -3'
miRNA:   3'- uGCAGcCGUaGCaGCCGGUUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 45773 0.71 0.361142
Target:  5'- cCGaUCGGCAUCG-CGGCgaAGGGCgGCg -3'
miRNA:   3'- uGC-AGCCGUAGCaGCCGg-UUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 29957 0.71 0.378238
Target:  5'- aGCGcCGGCGcuccUCGUCGGUC-AGGCcgGCc -3'
miRNA:   3'- -UGCaGCCGU----AGCAGCCGGuUCCGa-UG- -5'
24058 5' -57 NC_005262.1 + 10620 0.71 0.386988
Target:  5'- cGCGUCGGCAUagcCGuuUCGGCCGcccccGcGCUGCu -3'
miRNA:   3'- -UGCAGCCGUA---GC--AGCCGGUu----C-CGAUG- -5'
24058 5' -57 NC_005262.1 + 30150 0.71 0.386988
Target:  5'- gGCGUCGucgucgccggcaGCAUCGUCGGUCuugcccGCUGCu -3'
miRNA:   3'- -UGCAGC------------CGUAGCAGCCGGuuc---CGAUG- -5'
24058 5' -57 NC_005262.1 + 49825 0.7 0.39587
Target:  5'- cCGcCGGCGUCGgugCGGCUucGGCcGCc -3'
miRNA:   3'- uGCaGCCGUAGCa--GCCGGuuCCGaUG- -5'
24058 5' -57 NC_005262.1 + 27643 0.7 0.39587
Target:  5'- uGCG-CGGCGUCcUC-GCCGGGGCUGa -3'
miRNA:   3'- -UGCaGCCGUAGcAGcCGGUUCCGAUg -5'
24058 5' -57 NC_005262.1 + 52251 0.7 0.442189
Target:  5'- --cUCGGCGUCGa-GGCCGGGGUaguUGCg -3'
miRNA:   3'- ugcAGCCGUAGCagCCGGUUCCG---AUG- -5'
24058 5' -57 NC_005262.1 + 52824 0.69 0.451815
Target:  5'- gGCGcUCGGCGag--CGGCUgAAGGCUGCg -3'
miRNA:   3'- -UGC-AGCCGUagcaGCCGG-UUCCGAUG- -5'
24058 5' -57 NC_005262.1 + 5976 0.69 0.471406
Target:  5'- -gGUCGGCuuUUGcCGGCC--GGCUGCu -3'
miRNA:   3'- ugCAGCCGu-AGCaGCCGGuuCCGAUG- -5'
24058 5' -57 NC_005262.1 + 57579 0.69 0.471406
Target:  5'- aACuUCGGCGccUCGUCGGCC--GGCUu- -3'
miRNA:   3'- -UGcAGCCGU--AGCAGCCGGuuCCGAug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.