Results 41 - 54 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24058 | 5' | -57 | NC_005262.1 | + | 35232 | 0.67 | 0.61788 |
Target: 5'- -gGUCGGCGgcgCGaUCGGCagcGGCUGg -3' miRNA: 3'- ugCAGCCGUa--GC-AGCCGguuCCGAUg -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 17610 | 0.67 | 0.61788 |
Target: 5'- cGCGUgccCGuGCAUCGUC-GUCA-GGCUGCc -3' miRNA: 3'- -UGCA---GC-CGUAGCAGcCGGUuCCGAUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 52489 | 0.67 | 0.61788 |
Target: 5'- cGCGaUCGccuccaGCGUC-UCGGCCAgaAGGUUGCu -3' miRNA: 3'- -UGC-AGC------CGUAGcAGCCGGU--UCCGAUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 18002 | 0.67 | 0.61788 |
Target: 5'- gGCGUCGGCGcCGaUCGGCgGcucgccgaaaucGGGCggUGCu -3' miRNA: 3'- -UGCAGCCGUaGC-AGCCGgU------------UCCG--AUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 51269 | 0.66 | 0.628687 |
Target: 5'- aGCGggccgCcGCGUCGUCGGCUGccuGCUGCg -3' miRNA: 3'- -UGCa----GcCGUAGCAGCCGGUuc-CGAUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 54202 | 0.66 | 0.639498 |
Target: 5'- gGCGagGGCGcCGUCGacGUCGAGGCgcaGCa -3' miRNA: 3'- -UGCagCCGUaGCAGC--CGGUUCCGa--UG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 3774 | 0.66 | 0.639498 |
Target: 5'- gGCGcCGGCAucaccgUCGUcaCGGCCAGcgacGGCcGCg -3' miRNA: 3'- -UGCaGCCGU------AGCA--GCCGGUU----CCGaUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 27870 | 0.66 | 0.650302 |
Target: 5'- gACGgCGGCAagG-CGGCCGAGcGCa-- -3' miRNA: 3'- -UGCaGCCGUagCaGCCGGUUC-CGaug -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 16962 | 0.66 | 0.650302 |
Target: 5'- uGCGgccCGGCG-CG-CGGCCGGGcGcCUGCa -3' miRNA: 3'- -UGCa--GCCGUaGCaGCCGGUUC-C-GAUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 37004 | 0.66 | 0.66109 |
Target: 5'- aACGUCGGCGagacggacaUCGgCGGCgGuucauGGCUGu -3' miRNA: 3'- -UGCAGCCGU---------AGCaGCCGgUu----CCGAUg -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 44700 | 0.66 | 0.66109 |
Target: 5'- aACGU-GGCAUCGcCGcGCgCGAGGaaaUGCa -3' miRNA: 3'- -UGCAgCCGUAGCaGC-CG-GUUCCg--AUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 25372 | 0.66 | 0.670778 |
Target: 5'- cCGgugCGGCAucaucgcgcaggaUCGggagaCGGCCGAGGCg-- -3' miRNA: 3'- uGCa--GCCGU-------------AGCa----GCCGGUUCCGaug -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 52787 | 0.66 | 0.671852 |
Target: 5'- uCGUcCGGCGUCGgccggCGGCCuuccugcucGaGCUGCu -3' miRNA: 3'- uGCA-GCCGUAGCa----GCCGGuu-------C-CGAUG- -5' |
|||||||
24058 | 5' | -57 | NC_005262.1 | + | 51036 | 0.66 | 0.671852 |
Target: 5'- uGCGUCGGCuucagcUCGgCGGCC--GGCa-- -3' miRNA: 3'- -UGCAGCCGu-----AGCaGCCGGuuCCGaug -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home