miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24058 5' -57 NC_005262.1 + 38027 0.67 0.574856
Target:  5'- gGCGUUGGCGUCG-CGGuCCAuGcGCg-- -3'
miRNA:   3'- -UGCAGCCGUAGCaGCC-GGUuC-CGaug -5'
24058 5' -57 NC_005262.1 + 32889 0.67 0.574856
Target:  5'- cGCGUCGaa--CGUCGGCCAAgccGGCgGCg -3'
miRNA:   3'- -UGCAGCcguaGCAGCCGGUU---CCGaUG- -5'
24058 5' -57 NC_005262.1 + 19247 0.67 0.574856
Target:  5'- cGCGUUcaGGCggucgauguaGUCGcCGGCCAGGGUUcugACg -3'
miRNA:   3'- -UGCAG--CCG----------UAGCaGCCGGUUCCGA---UG- -5'
24058 5' -57 NC_005262.1 + 12721 0.67 0.570585
Target:  5'- gGCGUCccgccggagcaccGCGUCaUCGGUCAGuGGCUGCg -3'
miRNA:   3'- -UGCAGc------------CGUAGcAGCCGGUU-CCGAUG- -5'
24058 5' -57 NC_005262.1 + 32829 0.67 0.564194
Target:  5'- cAUGUcCGGCGaCGUCGGCgaCAAGGUUuCg -3'
miRNA:   3'- -UGCA-GCCGUaGCAGCCG--GUUCCGAuG- -5'
24058 5' -57 NC_005262.1 + 31139 0.67 0.564194
Target:  5'- cGCGUCGGCGUCGgUCaGCaccagcAGGCggUACu -3'
miRNA:   3'- -UGCAGCCGUAGC-AGcCGgu----UCCG--AUG- -5'
24058 5' -57 NC_005262.1 + 6603 0.67 0.56313
Target:  5'- aGCGUgaCGGCGagGUCGGCgCGcugaucgucgagcGGGUUGCg -3'
miRNA:   3'- -UGCA--GCCGUagCAGCCG-GU-------------UCCGAUG- -5'
24058 5' -57 NC_005262.1 + 35714 0.67 0.558882
Target:  5'- gGCGUCGGCGggacggccacgcugaUCcucgcauggcacuaCGGCCAAGGCgGCa -3'
miRNA:   3'- -UGCAGCCGU---------------AGca------------GCCGGUUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 2169 0.68 0.553584
Target:  5'- aGCG-CGGCuAUUGUCGGac--GGCUGCg -3'
miRNA:   3'- -UGCaGCCG-UAGCAGCCgguuCCGAUG- -5'
24058 5' -57 NC_005262.1 + 54586 0.68 0.543035
Target:  5'- gAUGUCGGU--CGggcccagCGGCUucGGCUGCa -3'
miRNA:   3'- -UGCAGCCGuaGCa------GCCGGuuCCGAUG- -5'
24058 5' -57 NC_005262.1 + 56732 0.68 0.531508
Target:  5'- gGCGUCGGCGuUCGacaUGGCCGccgcgcuggcgucGGGCgACg -3'
miRNA:   3'- -UGCAGCCGU-AGCa--GCCGGU-------------UCCGaUG- -5'
24058 5' -57 NC_005262.1 + 26631 0.68 0.511815
Target:  5'- cGCGUCGGCcgcuUCGgagUGGCCGccggucuugucGGGCUc- -3'
miRNA:   3'- -UGCAGCCGu---AGCa--GCCGGU-----------UCCGAug -5'
24058 5' -57 NC_005262.1 + 30237 0.68 0.501571
Target:  5'- cGCGUCGGCAUcCGcCGGCgCuucGGCg-- -3'
miRNA:   3'- -UGCAGCCGUA-GCaGCCG-Guu-CCGaug -5'
24058 5' -57 NC_005262.1 + 6853 0.69 0.481362
Target:  5'- --aUCGGCAUCGUgccCGGCCAcgagcacaacgAGGCg-- -3'
miRNA:   3'- ugcAGCCGUAGCA---GCCGGU-----------UCCGaug -5'
24058 5' -57 NC_005262.1 + 57579 0.69 0.471406
Target:  5'- aACuUCGGCGccUCGUCGGCC--GGCUu- -3'
miRNA:   3'- -UGcAGCCGU--AGCAGCCGGuuCCGAug -5'
24058 5' -57 NC_005262.1 + 5976 0.69 0.471406
Target:  5'- -gGUCGGCuuUUGcCGGCC--GGCUGCu -3'
miRNA:   3'- ugCAGCCGu-AGCaGCCGGuuCCGAUG- -5'
24058 5' -57 NC_005262.1 + 52824 0.69 0.451815
Target:  5'- gGCGcUCGGCGag--CGGCUgAAGGCUGCg -3'
miRNA:   3'- -UGC-AGCCGUagcaGCCGG-UUCCGAUG- -5'
24058 5' -57 NC_005262.1 + 52251 0.7 0.442189
Target:  5'- --cUCGGCGUCGa-GGCCGGGGUaguUGCg -3'
miRNA:   3'- ugcAGCCGUAGCagCCGGUUCCG---AUG- -5'
24058 5' -57 NC_005262.1 + 27643 0.7 0.39587
Target:  5'- uGCG-CGGCGUCcUC-GCCGGGGCUGa -3'
miRNA:   3'- -UGCaGCCGUAGcAGcCGGUUCCGAUg -5'
24058 5' -57 NC_005262.1 + 49825 0.7 0.39587
Target:  5'- cCGcCGGCGUCGgugCGGCUucGGCcGCc -3'
miRNA:   3'- uGCaGCCGUAGCa--GCCGGuuCCGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.