miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24058 5' -57 NC_005262.1 + 2169 0.68 0.553584
Target:  5'- aGCG-CGGCuAUUGUCGGac--GGCUGCg -3'
miRNA:   3'- -UGCaGCCG-UAGCAGCCgguuCCGAUG- -5'
24058 5' -57 NC_005262.1 + 3774 0.66 0.639498
Target:  5'- gGCGcCGGCAucaccgUCGUcaCGGCCAGcgacGGCcGCg -3'
miRNA:   3'- -UGCaGCCGU------AGCA--GCCGGUU----CCGaUG- -5'
24058 5' -57 NC_005262.1 + 4790 0.67 0.59631
Target:  5'- cAUGUCGGgAUCGgagcCGGCCGcguAGcGCUGg -3'
miRNA:   3'- -UGCAGCCgUAGCa---GCCGGU---UC-CGAUg -5'
24058 5' -57 NC_005262.1 + 5976 0.69 0.471406
Target:  5'- -gGUCGGCuuUUGcCGGCC--GGCUGCu -3'
miRNA:   3'- ugCAGCCGu-AGCaGCCGGuuCCGAUG- -5'
24058 5' -57 NC_005262.1 + 6603 0.67 0.56313
Target:  5'- aGCGUgaCGGCGagGUCGGCgCGcugaucgucgagcGGGUUGCg -3'
miRNA:   3'- -UGCA--GCCGUagCAGCCG-GU-------------UCCGAUG- -5'
24058 5' -57 NC_005262.1 + 6853 0.69 0.481362
Target:  5'- --aUCGGCAUCGUgccCGGCCAcgagcacaacgAGGCg-- -3'
miRNA:   3'- ugcAGCCGUAGCA---GCCGGU-----------UCCGaug -5'
24058 5' -57 NC_005262.1 + 10620 0.71 0.386988
Target:  5'- cGCGUCGGCAUagcCGuuUCGGCCGcccccGcGCUGCu -3'
miRNA:   3'- -UGCAGCCGUA---GC--AGCCGGUu----C-CGAUG- -5'
24058 5' -57 NC_005262.1 + 11261 0.77 0.160078
Target:  5'- cACGgCGGCGUCGUCGGCguugucgCAGGGCcGCc -3'
miRNA:   3'- -UGCaGCCGUAGCAGCCG-------GUUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 12562 0.67 0.59631
Target:  5'- cGCGgCGGCGcUCGUCGaGCUGcuGCUGCc -3'
miRNA:   3'- -UGCaGCCGU-AGCAGC-CGGUucCGAUG- -5'
24058 5' -57 NC_005262.1 + 12721 0.67 0.570585
Target:  5'- gGCGUCccgccggagcaccGCGUCaUCGGUCAGuGGCUGCg -3'
miRNA:   3'- -UGCAGc------------CGUAGcAGCCGGUU-CCGAUG- -5'
24058 5' -57 NC_005262.1 + 13483 0.67 0.59631
Target:  5'- cGCGUCGcGCGcuacUCGcUGGCgAAGGCgaagGCg -3'
miRNA:   3'- -UGCAGC-CGU----AGCaGCCGgUUCCGa---UG- -5'
24058 5' -57 NC_005262.1 + 16962 0.66 0.650302
Target:  5'- uGCGgccCGGCG-CG-CGGCCGGGcGcCUGCa -3'
miRNA:   3'- -UGCa--GCCGUaGCaGCCGGUUC-C-GAUG- -5'
24058 5' -57 NC_005262.1 + 17483 0.73 0.288885
Target:  5'- aGCGucUCGGCAUUGUCGGCCGccgagucgaccggcAGGUUc- -3'
miRNA:   3'- -UGC--AGCCGUAGCAGCCGGU--------------UCCGAug -5'
24058 5' -57 NC_005262.1 + 17610 0.67 0.61788
Target:  5'- cGCGUgccCGuGCAUCGUC-GUCA-GGCUGCc -3'
miRNA:   3'- -UGCA---GC-CGUAGCAGcCGGUuCCGAUG- -5'
24058 5' -57 NC_005262.1 + 18002 0.67 0.61788
Target:  5'- gGCGUCGGCGcCGaUCGGCgGcucgccgaaaucGGGCggUGCu -3'
miRNA:   3'- -UGCAGCCGUaGC-AGCCGgU------------UCCG--AUG- -5'
24058 5' -57 NC_005262.1 + 19247 0.67 0.574856
Target:  5'- cGCGUUcaGGCggucgauguaGUCGcCGGCCAGGGUUcugACg -3'
miRNA:   3'- -UGCAG--CCG----------UAGCaGCCGGUUCCGA---UG- -5'
24058 5' -57 NC_005262.1 + 21334 0.74 0.238056
Target:  5'- cACGUCcaggaGGCgAUCGaggCGGCCAAGGCcGCg -3'
miRNA:   3'- -UGCAG-----CCG-UAGCa--GCCGGUUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 22124 0.72 0.305638
Target:  5'- cACGUggcCGGCaAUCGUCuGGCCGccgcGGCUGCc -3'
miRNA:   3'- -UGCA---GCCG-UAGCAG-CCGGUu---CCGAUG- -5'
24058 5' -57 NC_005262.1 + 25372 0.66 0.670778
Target:  5'- cCGgugCGGCAucaucgcgcaggaUCGggagaCGGCCGAGGCg-- -3'
miRNA:   3'- uGCa--GCCGU-------------AGCa----GCCGGUUCCGaug -5'
24058 5' -57 NC_005262.1 + 26631 0.68 0.511815
Target:  5'- cGCGUCGGCcgcuUCGgagUGGCCGccggucuugucGGGCUc- -3'
miRNA:   3'- -UGCAGCCGu---AGCa--GCCGGU-----------UCCGAug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.