miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24058 5' -57 NC_005262.1 + 51036 0.66 0.671852
Target:  5'- uGCGUCGGCuucagcUCGgCGGCC--GGCa-- -3'
miRNA:   3'- -UGCAGCCGu-----AGCaGCCGGuuCCGaug -5'
24058 5' -57 NC_005262.1 + 51269 0.66 0.628687
Target:  5'- aGCGggccgCcGCGUCGUCGGCUGccuGCUGCg -3'
miRNA:   3'- -UGCa----GcCGUAGCAGCCGGUuc-CGAUG- -5'
24058 5' -57 NC_005262.1 + 51374 0.72 0.328593
Target:  5'- cCGUCcGCGaCGcCGGCCAAGGCcGCg -3'
miRNA:   3'- uGCAGcCGUaGCaGCCGGUUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 51907 0.77 0.164878
Target:  5'- gACGUCGGCcgcgcugaaGUCGUC-GCCGAGGCggUACg -3'
miRNA:   3'- -UGCAGCCG---------UAGCAGcCGGUUCCG--AUG- -5'
24058 5' -57 NC_005262.1 + 52251 0.7 0.442189
Target:  5'- --cUCGGCGUCGa-GGCCGGGGUaguUGCg -3'
miRNA:   3'- ugcAGCCGUAGCagCCGGUUCCG---AUG- -5'
24058 5' -57 NC_005262.1 + 52489 0.67 0.61788
Target:  5'- cGCGaUCGccuccaGCGUC-UCGGCCAgaAGGUUGCu -3'
miRNA:   3'- -UGC-AGC------CGUAGcAGCCGGU--UCCGAUG- -5'
24058 5' -57 NC_005262.1 + 52787 0.66 0.671852
Target:  5'- uCGUcCGGCGUCGgccggCGGCCuuccugcucGaGCUGCu -3'
miRNA:   3'- uGCA-GCCGUAGCa----GCCGGuu-------C-CGAUG- -5'
24058 5' -57 NC_005262.1 + 52824 0.69 0.451815
Target:  5'- gGCGcUCGGCGag--CGGCUgAAGGCUGCg -3'
miRNA:   3'- -UGC-AGCCGUagcaGCCGG-UUCCGAUG- -5'
24058 5' -57 NC_005262.1 + 54202 0.66 0.639498
Target:  5'- gGCGagGGCGcCGUCGacGUCGAGGCgcaGCa -3'
miRNA:   3'- -UGCagCCGUaGCAGC--CGGUUCCGa--UG- -5'
24058 5' -57 NC_005262.1 + 54586 0.68 0.543035
Target:  5'- gAUGUCGGU--CGggcccagCGGCUucGGCUGCa -3'
miRNA:   3'- -UGCAGCCGuaGCa------GCCGGuuCCGAUG- -5'
24058 5' -57 NC_005262.1 + 56732 0.68 0.531508
Target:  5'- gGCGUCGGCGuUCGacaUGGCCGccgcgcuggcgucGGGCgACg -3'
miRNA:   3'- -UGCAGCCGU-AGCa--GCCGGU-------------UCCGaUG- -5'
24058 5' -57 NC_005262.1 + 57579 0.69 0.471406
Target:  5'- aACuUCGGCGccUCGUCGGCC--GGCUu- -3'
miRNA:   3'- -UGcAGCCGU--AGCAGCCGGuuCCGAug -5'
24058 5' -57 NC_005262.1 + 60128 0.67 0.59631
Target:  5'- gGCGcCaGCGUCG-CGGCgAAGGCauggGCg -3'
miRNA:   3'- -UGCaGcCGUAGCaGCCGgUUCCGa---UG- -5'
24058 5' -57 NC_005262.1 + 60844 0.73 0.291029
Target:  5'- cGCGaUCGGCGUggCGaUGGCCGAGGCaaUGCg -3'
miRNA:   3'- -UGC-AGCCGUA--GCaGCCGGUUCCG--AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.