miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24058 5' -57 NC_005262.1 + 44700 0.66 0.66109
Target:  5'- aACGU-GGCAUCGcCGcGCgCGAGGaaaUGCa -3'
miRNA:   3'- -UGCAgCCGUAGCaGC-CG-GUUCCg--AUG- -5'
24058 5' -57 NC_005262.1 + 39857 0.73 0.27015
Target:  5'- cGCGUCGGgAUgGUCGGCUGGcGGCUu- -3'
miRNA:   3'- -UGCAGCCgUAgCAGCCGGUU-CCGAug -5'
24058 5' -57 NC_005262.1 + 38027 0.67 0.574856
Target:  5'- gGCGUUGGCGUCG-CGGuCCAuGcGCg-- -3'
miRNA:   3'- -UGCAGCCGUAGCaGCC-GGUuC-CGaug -5'
24058 5' -57 NC_005262.1 + 37004 0.66 0.66109
Target:  5'- aACGUCGGCGagacggacaUCGgCGGCgGuucauGGCUGu -3'
miRNA:   3'- -UGCAGCCGU---------AGCaGCCGgUu----CCGAUg -5'
24058 5' -57 NC_005262.1 + 35714 0.67 0.558882
Target:  5'- gGCGUCGGCGggacggccacgcugaUCcucgcauggcacuaCGGCCAAGGCgGCa -3'
miRNA:   3'- -UGCAGCCGU---------------AGca------------GCCGGUUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 35232 0.67 0.61788
Target:  5'- -gGUCGGCGgcgCGaUCGGCagcGGCUGg -3'
miRNA:   3'- ugCAGCCGUa--GC-AGCCGguuCCGAUg -5'
24058 5' -57 NC_005262.1 + 32889 0.67 0.574856
Target:  5'- cGCGUCGaa--CGUCGGCCAAgccGGCgGCg -3'
miRNA:   3'- -UGCAGCcguaGCAGCCGGUU---CCGaUG- -5'
24058 5' -57 NC_005262.1 + 32829 0.67 0.564194
Target:  5'- cAUGUcCGGCGaCGUCGGCgaCAAGGUUuCg -3'
miRNA:   3'- -UGCA-GCCGUaGCAGCCG--GUUCCGAuG- -5'
24058 5' -57 NC_005262.1 + 31139 0.67 0.564194
Target:  5'- cGCGUCGGCGUCGgUCaGCaccagcAGGCggUACu -3'
miRNA:   3'- -UGCAGCCGUAGC-AGcCGgu----UCCG--AUG- -5'
24058 5' -57 NC_005262.1 + 30237 0.68 0.501571
Target:  5'- cGCGUCGGCAUcCGcCGGCgCuucGGCg-- -3'
miRNA:   3'- -UGCAGCCGUA-GCaGCCG-Guu-CCGaug -5'
24058 5' -57 NC_005262.1 + 30150 0.71 0.386988
Target:  5'- gGCGUCGucgucgccggcaGCAUCGUCGGUCuugcccGCUGCu -3'
miRNA:   3'- -UGCAGC------------CGUAGCAGCCGGuuc---CGAUG- -5'
24058 5' -57 NC_005262.1 + 29957 0.71 0.378238
Target:  5'- aGCGcCGGCGcuccUCGUCGGUC-AGGCcgGCc -3'
miRNA:   3'- -UGCaGCCGU----AGCAGCCGGuUCCGa-UG- -5'
24058 5' -57 NC_005262.1 + 27870 0.66 0.650302
Target:  5'- gACGgCGGCAagG-CGGCCGAGcGCa-- -3'
miRNA:   3'- -UGCaGCCGUagCaGCCGGUUC-CGaug -5'
24058 5' -57 NC_005262.1 + 27643 0.7 0.39587
Target:  5'- uGCG-CGGCGUCcUC-GCCGGGGCUGa -3'
miRNA:   3'- -UGCaGCCGUAGcAGcCGGUUCCGAUg -5'
24058 5' -57 NC_005262.1 + 26631 0.68 0.511815
Target:  5'- cGCGUCGGCcgcuUCGgagUGGCCGccggucuugucGGGCUc- -3'
miRNA:   3'- -UGCAGCCGu---AGCa--GCCGGU-----------UCCGAug -5'
24058 5' -57 NC_005262.1 + 25372 0.66 0.670778
Target:  5'- cCGgugCGGCAucaucgcgcaggaUCGggagaCGGCCGAGGCg-- -3'
miRNA:   3'- uGCa--GCCGU-------------AGCa----GCCGGUUCCGaug -5'
24058 5' -57 NC_005262.1 + 22124 0.72 0.305638
Target:  5'- cACGUggcCGGCaAUCGUCuGGCCGccgcGGCUGCc -3'
miRNA:   3'- -UGCA---GCCG-UAGCAG-CCGGUu---CCGAUG- -5'
24058 5' -57 NC_005262.1 + 21334 0.74 0.238056
Target:  5'- cACGUCcaggaGGCgAUCGaggCGGCCAAGGCcGCg -3'
miRNA:   3'- -UGCAG-----CCG-UAGCa--GCCGGUUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 19247 0.67 0.574856
Target:  5'- cGCGUUcaGGCggucgauguaGUCGcCGGCCAGGGUUcugACg -3'
miRNA:   3'- -UGCAG--CCG----------UAGCaGCCGGUUCCGA---UG- -5'
24058 5' -57 NC_005262.1 + 18002 0.67 0.61788
Target:  5'- gGCGUCGGCGcCGaUCGGCgGcucgccgaaaucGGGCggUGCu -3'
miRNA:   3'- -UGCAGCCGUaGC-AGCCGgU------------UCCG--AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.