miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24058 5' -57 NC_005262.1 + 27870 0.66 0.650302
Target:  5'- gACGgCGGCAagG-CGGCCGAGcGCa-- -3'
miRNA:   3'- -UGCaGCCGUagCaGCCGGUUC-CGaug -5'
24058 5' -57 NC_005262.1 + 12721 0.67 0.570585
Target:  5'- gGCGUCccgccggagcaccGCGUCaUCGGUCAGuGGCUGCg -3'
miRNA:   3'- -UGCAGc------------CGUAGcAGCCGGUU-CCGAUG- -5'
24058 5' -57 NC_005262.1 + 19247 0.67 0.574856
Target:  5'- cGCGUUcaGGCggucgauguaGUCGcCGGCCAGGGUUcugACg -3'
miRNA:   3'- -UGCAG--CCG----------UAGCaGCCGGUUCCGA---UG- -5'
24058 5' -57 NC_005262.1 + 32889 0.67 0.574856
Target:  5'- cGCGUCGaa--CGUCGGCCAAgccGGCgGCg -3'
miRNA:   3'- -UGCAGCcguaGCAGCCGGUU---CCGaUG- -5'
24058 5' -57 NC_005262.1 + 4790 0.67 0.59631
Target:  5'- cAUGUCGGgAUCGgagcCGGCCGcguAGcGCUGg -3'
miRNA:   3'- -UGCAGCCgUAGCa---GCCGGU---UC-CGAUg -5'
24058 5' -57 NC_005262.1 + 12562 0.67 0.59631
Target:  5'- cGCGgCGGCGcUCGUCGaGCUGcuGCUGCc -3'
miRNA:   3'- -UGCaGCCGU-AGCAGC-CGGUucCGAUG- -5'
24058 5' -57 NC_005262.1 + 13483 0.67 0.59631
Target:  5'- cGCGUCGcGCGcuacUCGcUGGCgAAGGCgaagGCg -3'
miRNA:   3'- -UGCAGC-CGU----AGCaGCCGgUUCCGa---UG- -5'
24058 5' -57 NC_005262.1 + 60128 0.67 0.59631
Target:  5'- gGCGcCaGCGUCG-CGGCgAAGGCauggGCg -3'
miRNA:   3'- -UGCaGcCGUAGCaGCCGgUUCCGa---UG- -5'
24058 5' -57 NC_005262.1 + 35232 0.67 0.61788
Target:  5'- -gGUCGGCGgcgCGaUCGGCagcGGCUGg -3'
miRNA:   3'- ugCAGCCGUa--GC-AGCCGguuCCGAUg -5'
24058 5' -57 NC_005262.1 + 32829 0.67 0.564194
Target:  5'- cAUGUcCGGCGaCGUCGGCgaCAAGGUUuCg -3'
miRNA:   3'- -UGCA-GCCGUaGCAGCCG--GUUCCGAuG- -5'
24058 5' -57 NC_005262.1 + 35714 0.67 0.558882
Target:  5'- gGCGUCGGCGggacggccacgcugaUCcucgcauggcacuaCGGCCAAGGCgGCa -3'
miRNA:   3'- -UGCAGCCGU---------------AGca------------GCCGGUUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 2169 0.68 0.553584
Target:  5'- aGCG-CGGCuAUUGUCGGac--GGCUGCg -3'
miRNA:   3'- -UGCaGCCG-UAGCAGCCgguuCCGAUG- -5'
24058 5' -57 NC_005262.1 + 21334 0.74 0.238056
Target:  5'- cACGUCcaggaGGCgAUCGaggCGGCCAAGGCcGCg -3'
miRNA:   3'- -UGCAG-----CCG-UAGCa--GCCGGUUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 60844 0.73 0.291029
Target:  5'- cGCGaUCGGCGUggCGaUGGCCGAGGCaaUGCg -3'
miRNA:   3'- -UGC-AGCCGUA--GCaGCCGGUUCCG--AUG- -5'
24058 5' -57 NC_005262.1 + 22124 0.72 0.305638
Target:  5'- cACGUggcCGGCaAUCGUCuGGCCGccgcGGCUGCc -3'
miRNA:   3'- -UGCA---GCCG-UAGCAG-CCGGUu---CCGAUG- -5'
24058 5' -57 NC_005262.1 + 51374 0.72 0.328593
Target:  5'- cCGUCcGCGaCGcCGGCCAAGGCcGCg -3'
miRNA:   3'- uGCAGcCGUaGCaGCCGGUUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 45773 0.71 0.361142
Target:  5'- cCGaUCGGCAUCG-CGGCgaAGGGCgGCg -3'
miRNA:   3'- uGC-AGCCGUAGCaGCCGg-UUCCGaUG- -5'
24058 5' -57 NC_005262.1 + 52824 0.69 0.451815
Target:  5'- gGCGcUCGGCGag--CGGCUgAAGGCUGCg -3'
miRNA:   3'- -UGC-AGCCGUagcaGCCGG-UUCCGAUG- -5'
24058 5' -57 NC_005262.1 + 5976 0.69 0.471406
Target:  5'- -gGUCGGCuuUUGcCGGCC--GGCUGCu -3'
miRNA:   3'- ugCAGCCGu-AGCaGCCGGuuCCGAUG- -5'
24058 5' -57 NC_005262.1 + 56732 0.68 0.531508
Target:  5'- gGCGUCGGCGuUCGacaUGGCCGccgcgcuggcgucGGGCgACg -3'
miRNA:   3'- -UGCAGCCGU-AGCa--GCCGGU-------------UCCGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.