Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24058 | 5' | -57 | NC_005262.1 | + | 52787 | 0.66 | 0.671852 |
Target: 5'- uCGUcCGGCGUCGgccggCGGCCuuccugcucGaGCUGCu -3' miRNA: 3'- uGCA-GCCGUAGCa----GCCGGuu-------C-CGAUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 16962 | 0.66 | 0.650302 |
Target: 5'- uGCGgccCGGCG-CG-CGGCCGGGcGcCUGCa -3' miRNA: 3'- -UGCa--GCCGUaGCaGCCGGUUC-C-GAUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 54202 | 0.66 | 0.639498 |
Target: 5'- gGCGagGGCGcCGUCGacGUCGAGGCgcaGCa -3' miRNA: 3'- -UGCagCCGUaGCAGC--CGGUUCCGa--UG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 3774 | 0.66 | 0.639498 |
Target: 5'- gGCGcCGGCAucaccgUCGUcaCGGCCAGcgacGGCcGCg -3' miRNA: 3'- -UGCaGCCGU------AGCA--GCCGGUU----CCGaUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 51269 | 0.66 | 0.628687 |
Target: 5'- aGCGggccgCcGCGUCGUCGGCUGccuGCUGCg -3' miRNA: 3'- -UGCa----GcCGUAGCAGCCGGUuc-CGAUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 17610 | 0.67 | 0.61788 |
Target: 5'- cGCGUgccCGuGCAUCGUC-GUCA-GGCUGCc -3' miRNA: 3'- -UGCA---GC-CGUAGCAGcCGGUuCCGAUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 18002 | 0.67 | 0.61788 |
Target: 5'- gGCGUCGGCGcCGaUCGGCgGcucgccgaaaucGGGCggUGCu -3' miRNA: 3'- -UGCAGCCGUaGC-AGCCGgU------------UCCG--AUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 52489 | 0.67 | 0.61788 |
Target: 5'- cGCGaUCGccuccaGCGUC-UCGGCCAgaAGGUUGCu -3' miRNA: 3'- -UGC-AGC------CGUAGcAGCCGGU--UCCGAUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 49866 | 0.67 | 0.6168 |
Target: 5'- gGCGUcCGGCG-CGgcagCGGCCGgagccucGGGCgcggGCg -3' miRNA: 3'- -UGCA-GCCGUaGCa---GCCGGU-------UCCGa---UG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 48168 | 0.67 | 0.59631 |
Target: 5'- cGCGUCGGCGccgggcggcUCGUCGcGgCAGGuGCgaccgACg -3' miRNA: 3'- -UGCAGCCGU---------AGCAGC-CgGUUC-CGa----UG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 38027 | 0.67 | 0.574856 |
Target: 5'- gGCGUUGGCGUCG-CGGuCCAuGcGCg-- -3' miRNA: 3'- -UGCAGCCGUAGCaGCC-GGUuC-CGaug -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 31139 | 0.67 | 0.564194 |
Target: 5'- cGCGUCGGCGUCGgUCaGCaccagcAGGCggUACu -3' miRNA: 3'- -UGCAGCCGUAGC-AGcCGgu----UCCG--AUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 6603 | 0.67 | 0.56313 |
Target: 5'- aGCGUgaCGGCGagGUCGGCgCGcugaucgucgagcGGGUUGCg -3' miRNA: 3'- -UGCA--GCCGUagCAGCCG-GU-------------UCCGAUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 51036 | 0.66 | 0.671852 |
Target: 5'- uGCGUCGGCuucagcUCGgCGGCC--GGCa-- -3' miRNA: 3'- -UGCAGCCGu-----AGCaGCCGGuuCCGaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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