Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24058 | 5' | -57 | NC_005262.1 | + | 32829 | 0.67 | 0.564194 |
Target: 5'- cAUGUcCGGCGaCGUCGGCgaCAAGGUUuCg -3' miRNA: 3'- -UGCA-GCCGUaGCAGCCG--GUUCCGAuG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 12721 | 0.67 | 0.570585 |
Target: 5'- gGCGUCccgccggagcaccGCGUCaUCGGUCAGuGGCUGCg -3' miRNA: 3'- -UGCAGc------------CGUAGcAGCCGGUU-CCGAUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 25372 | 0.66 | 0.670778 |
Target: 5'- cCGgugCGGCAucaucgcgcaggaUCGggagaCGGCCGAGGCg-- -3' miRNA: 3'- uGCa--GCCGU-------------AGCa----GCCGGUUCCGaug -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 44700 | 0.66 | 0.66109 |
Target: 5'- aACGU-GGCAUCGcCGcGCgCGAGGaaaUGCa -3' miRNA: 3'- -UGCAgCCGUAGCaGC-CG-GUUCCg--AUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 27870 | 0.66 | 0.650302 |
Target: 5'- gACGgCGGCAagG-CGGCCGAGcGCa-- -3' miRNA: 3'- -UGCaGCCGUagCaGCCGGUUC-CGaug -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 35232 | 0.67 | 0.61788 |
Target: 5'- -gGUCGGCGgcgCGaUCGGCagcGGCUGg -3' miRNA: 3'- ugCAGCCGUa--GC-AGCCGguuCCGAUg -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 37004 | 0.66 | 0.66109 |
Target: 5'- aACGUCGGCGagacggacaUCGgCGGCgGuucauGGCUGu -3' miRNA: 3'- -UGCAGCCGU---------AGCaGCCGgUu----CCGAUg -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 60128 | 0.67 | 0.59631 |
Target: 5'- gGCGcCaGCGUCG-CGGCgAAGGCauggGCg -3' miRNA: 3'- -UGCaGcCGUAGCaGCCGgUUCCGa---UG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 13483 | 0.67 | 0.59631 |
Target: 5'- cGCGUCGcGCGcuacUCGcUGGCgAAGGCgaagGCg -3' miRNA: 3'- -UGCAGC-CGU----AGCaGCCGgUUCCGa---UG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 12562 | 0.67 | 0.59631 |
Target: 5'- cGCGgCGGCGcUCGUCGaGCUGcuGCUGCc -3' miRNA: 3'- -UGCaGCCGU-AGCAGC-CGGUucCGAUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 4790 | 0.67 | 0.59631 |
Target: 5'- cAUGUCGGgAUCGgagcCGGCCGcguAGcGCUGg -3' miRNA: 3'- -UGCAGCCgUAGCa---GCCGGU---UC-CGAUg -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 32889 | 0.67 | 0.574856 |
Target: 5'- cGCGUCGaa--CGUCGGCCAAgccGGCgGCg -3' miRNA: 3'- -UGCAGCcguaGCAGCCGGUU---CCGaUG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 19247 | 0.67 | 0.574856 |
Target: 5'- cGCGUUcaGGCggucgauguaGUCGcCGGCCAGGGUUcugACg -3' miRNA: 3'- -UGCAG--CCG----------UAGCaGCCGGUUCCGA---UG- -5' |
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24058 | 5' | -57 | NC_005262.1 | + | 45297 | 1.1 | 0.000718 |
Target: 5'- aACGUCGGCAUCGUCGGCCAAGGCUACa -3' miRNA: 3'- -UGCAGCCGUAGCAGCCGGUUCCGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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