miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24059 3' -54 NC_005262.1 + 40465 0.66 0.841254
Target:  5'- cCGGccGUGcauGGGcCGGGCuGGUAUCugGCg -3'
miRNA:   3'- cGUC--UACu--UCC-GCCUG-CCGUAGugCG- -5'
24059 3' -54 NC_005262.1 + 25313 0.66 0.841254
Target:  5'- cGCGGuuc-GGGCGGAagGGCAgCACGa -3'
miRNA:   3'- -CGUCuacuUCCGCCUg-CCGUaGUGCg -5'
24059 3' -54 NC_005262.1 + 13310 0.66 0.832451
Target:  5'- -gAGAgGAGcguuGGCGGACGcGCcgGUUGCGCg -3'
miRNA:   3'- cgUCUaCUU----CCGCCUGC-CG--UAGUGCG- -5'
24059 3' -54 NC_005262.1 + 17154 0.66 0.823438
Target:  5'- cGCAaucGA-GAAGGcCGGcaaGGCcgCGCGCg -3'
miRNA:   3'- -CGU---CUaCUUCC-GCCug-CCGuaGUGCG- -5'
24059 3' -54 NC_005262.1 + 26791 0.66 0.823438
Target:  5'- uGCGGAUGucgaccgaucGGGcCGGccACGGCAcugCACGUu -3'
miRNA:   3'- -CGUCUACu---------UCC-GCC--UGCCGUa--GUGCG- -5'
24059 3' -54 NC_005262.1 + 37080 0.66 0.823438
Target:  5'- --cGAcGAAuGGUGGAUacaagGGCGUCACGUu -3'
miRNA:   3'- cguCUaCUU-CCGCCUG-----CCGUAGUGCG- -5'
24059 3' -54 NC_005262.1 + 43821 0.66 0.823438
Target:  5'- cGCGGcgacacGGccGCGGGcCGGCcgCGCGCg -3'
miRNA:   3'- -CGUCua----CUucCGCCU-GCCGuaGUGCG- -5'
24059 3' -54 NC_005262.1 + 29953 0.66 0.823438
Target:  5'- cCGGAcGcGGGCGG-CGGCGaaggugccaaaUCugGCa -3'
miRNA:   3'- cGUCUaCuUCCGCCuGCCGU-----------AGugCG- -5'
24059 3' -54 NC_005262.1 + 10520 0.66 0.814227
Target:  5'- aGCAGcgcGggGGCGGccgaaACGGCuaugCcgACGCg -3'
miRNA:   3'- -CGUCua-CuuCCGCC-----UGCCGua--G--UGCG- -5'
24059 3' -54 NC_005262.1 + 61119 0.66 0.814227
Target:  5'- gGC-GAcGAAGG-GGACGGUGUacgaCGCGCu -3'
miRNA:   3'- -CGuCUaCUUCCgCCUGCCGUA----GUGCG- -5'
24059 3' -54 NC_005262.1 + 11280 0.66 0.810489
Target:  5'- uGCAGGUGGcgcgcacgaucacGGCGGcgucguCGGCGUUGuCGCa -3'
miRNA:   3'- -CGUCUACUu------------CCGCCu-----GCCGUAGU-GCG- -5'
24059 3' -54 NC_005262.1 + 22354 0.66 0.804826
Target:  5'- uGCGGGgacguauGGC-GACGGCGUgAUGCg -3'
miRNA:   3'- -CGUCUacuu---CCGcCUGCCGUAgUGCG- -5'
24059 3' -54 NC_005262.1 + 33641 0.66 0.804826
Target:  5'- cGCAGGUGuccGAGGCuGACGaGCgcgccucgcugGUCGcCGCg -3'
miRNA:   3'- -CGUCUAC---UUCCGcCUGC-CG-----------UAGU-GCG- -5'
24059 3' -54 NC_005262.1 + 48484 0.67 0.799099
Target:  5'- cGUGGGcacgGgcGGCGcGACGGCAgccgcagguaacagCGCGCu -3'
miRNA:   3'- -CGUCUa---CuuCCGC-CUGCCGUa-------------GUGCG- -5'
24059 3' -54 NC_005262.1 + 31165 0.67 0.785498
Target:  5'- cGUAGGUGAGaGCGuGAagauCGGCGacgcgacgaUCACGCu -3'
miRNA:   3'- -CGUCUACUUcCGC-CU----GCCGU---------AGUGCG- -5'
24059 3' -54 NC_005262.1 + 62694 0.67 0.785498
Target:  5'- gGCAGG-GGAGcGCGacGAUGGguaAUCGCGCa -3'
miRNA:   3'- -CGUCUaCUUC-CGC--CUGCCg--UAGUGCG- -5'
24059 3' -54 NC_005262.1 + 38028 0.67 0.785498
Target:  5'- ---cGUGAAGGCuGAauucgacuuCGGCAUCACGa -3'
miRNA:   3'- cgucUACUUCCGcCU---------GCCGUAGUGCg -5'
24059 3' -54 NC_005262.1 + 15313 0.67 0.785498
Target:  5'- cGCAu----GGGCGGGCGGcCGUCGaGCa -3'
miRNA:   3'- -CGUcuacuUCCGCCUGCC-GUAGUgCG- -5'
24059 3' -54 NC_005262.1 + 27996 0.67 0.785498
Target:  5'- cGCAGGUGcAGGaCGagaacGACGGCGagccgaUCuACGCg -3'
miRNA:   3'- -CGUCUACuUCC-GC-----CUGCCGU------AG-UGCG- -5'
24059 3' -54 NC_005262.1 + 45029 0.67 0.778579
Target:  5'- gGCAGAUGGcgagcauGGggaucaacccggcgaGCGGccgauuccAgGGCAUCACGCg -3'
miRNA:   3'- -CGUCUACU-------UC---------------CGCC--------UgCCGUAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.