miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24060 3' -57.4 NC_005262.1 + 50870 0.69 0.445847
Target:  5'- --gCAGGuGCCGAcgcaaucGCAcGGCGCGCCgUCa -3'
miRNA:   3'- uuaGUUC-CGGCU-------UGU-CCGCGCGG-AGc -5'
24060 3' -57.4 NC_005262.1 + 17175 0.69 0.446814
Target:  5'- -cUCGcGGCCcgccgcgucGACGGGCGCGCCuaUCGg -3'
miRNA:   3'- uuAGUuCCGGc--------UUGUCCGCGCGG--AGC- -5'
24060 3' -57.4 NC_005262.1 + 25388 0.69 0.409064
Target:  5'- gGGUCGuaaaGCCGAGCuGGCGgGCCUUc -3'
miRNA:   3'- -UUAGUuc--CGGCUUGuCCGCgCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 20816 0.69 0.406314
Target:  5'- gGGUCGAGcuGCCGAGCgacgcgaccgugauGGGCuGCGCCUuCGa -3'
miRNA:   3'- -UUAGUUC--CGGCUUG--------------UCCG-CGCGGA-GC- -5'
24060 3' -57.4 NC_005262.1 + 60065 0.69 0.449723
Target:  5'- gGAUCGGGuGCaugcgcgccugauCGAGCGGGCgaaucugcuucgcgaGCGCCUCGu -3'
miRNA:   3'- -UUAGUUC-CG-------------GCUUGUCCG---------------CGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 5897 0.68 0.476361
Target:  5'- cGUCGAuGUCGGGCGGGaGCGCCUUc -3'
miRNA:   3'- uUAGUUcCGGCUUGUCCgCGCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 58599 0.68 0.486425
Target:  5'- ----uGGGCUGAu--GGgGCGCCUCGa -3'
miRNA:   3'- uuaguUCCGGCUuguCCgCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 54270 0.68 0.453618
Target:  5'- --aCAAGGgCGugcucgaccucgacGACGuGGCGCGCCUCu -3'
miRNA:   3'- uuaGUUCCgGC--------------UUGU-CCGCGCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 29150 0.68 0.456551
Target:  5'- --aCGAGGCCG-AguGGCGCGCgaCc -3'
miRNA:   3'- uuaGUUCCGGCuUguCCGCGCGgaGc -5'
24060 3' -57.4 NC_005262.1 + 5167 0.68 0.506846
Target:  5'- uGAUCGGugacGGCCGGcgucgcgggcGCGGGCGCgGCCggcgCGa -3'
miRNA:   3'- -UUAGUU----CCGGCU----------UGUCCGCG-CGGa---GC- -5'
24060 3' -57.4 NC_005262.1 + 17061 0.68 0.465412
Target:  5'- cGUCGcgcgcacGGcGCCG-AUAGGCGCGCCcgUCGa -3'
miRNA:   3'- uUAGU-------UC-CGGCuUGUCCGCGCGG--AGC- -5'
24060 3' -57.4 NC_005262.1 + 32893 0.68 0.463435
Target:  5'- ---uGAGGCCGAcgucgaacgcgaugGCcGGCGCGCCgcCGg -3'
miRNA:   3'- uuagUUCCGGCU--------------UGuCCGCGCGGa-GC- -5'
24060 3' -57.4 NC_005262.1 + 24447 0.67 0.548711
Target:  5'- --aCAGGGuuGcagguauCAGGCGCGCCg-- -3'
miRNA:   3'- uuaGUUCCggCuu-----GUCCGCGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 13828 0.67 0.558287
Target:  5'- --gCGAGGCUGAaugccugGCAcGGCGUGCCa-- -3'
miRNA:   3'- uuaGUUCCGGCU-------UGU-CCGCGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 22512 0.67 0.559354
Target:  5'- --aCGGGGUugccggCGAGCAGGCG-GCgCUCGa -3'
miRNA:   3'- uuaGUUCCG------GCUUGUCCGCgCG-GAGC- -5'
24060 3' -57.4 NC_005262.1 + 17779 0.67 0.517193
Target:  5'- -uUCGAGGCCGAGCGcaaaGCcaGCCUCa -3'
miRNA:   3'- uuAGUUCCGGCUUGUccg-CG--CGGAGc -5'
24060 3' -57.4 NC_005262.1 + 16575 0.67 0.517193
Target:  5'- ---gGAuGCCGAGCAGGCGCGUgUg- -3'
miRNA:   3'- uuagUUcCGGCUUGUCCGCGCGgAgc -5'
24060 3' -57.4 NC_005262.1 + 50254 0.67 0.570054
Target:  5'- aGAUCGAccGCCGcAACgaGGGCGCGCC-CGc -3'
miRNA:   3'- -UUAGUUc-CGGC-UUG--UCCGCGCGGaGC- -5'
24060 3' -57.4 NC_005262.1 + 49208 0.67 0.517193
Target:  5'- --gCAugcuGGCCGA--GGGCG-GCCUCGg -3'
miRNA:   3'- uuaGUu---CCGGCUugUCCGCgCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 58910 0.67 0.548711
Target:  5'- cGAUC-AGGCCGGcggcccgaccgAUGGcGCGCGCUUCu -3'
miRNA:   3'- -UUAGuUCCGGCU-----------UGUC-CGCGCGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.