miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24060 3' -57.4 NC_005262.1 + 49888 0.7 0.369916
Target:  5'- cGAUC-GGGCCGGACGgugcaggggcguccGGCGCggcagcggccggaGCCUCGg -3'
miRNA:   3'- -UUAGuUCCGGCUUGU--------------CCGCG-------------CGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 50254 0.67 0.570054
Target:  5'- aGAUCGAccGCCGcAACgaGGGCGCGCC-CGc -3'
miRNA:   3'- -UUAGUUc-CGGC-UUG--UCCGCGCGGaGC- -5'
24060 3' -57.4 NC_005262.1 + 50366 0.75 0.179926
Target:  5'- cGUCAcgggcucGGCCGGcGCGGGCGCGcCCUCGu -3'
miRNA:   3'- uUAGUu------CCGGCU-UGUCCGCGC-GGAGC- -5'
24060 3' -57.4 NC_005262.1 + 50870 0.69 0.445847
Target:  5'- --gCAGGuGCCGAcgcaaucGCAcGGCGCGCCgUCa -3'
miRNA:   3'- uuaGUUC-CGGCU-------UGU-CCGCGCGG-AGc -5'
24060 3' -57.4 NC_005262.1 + 51950 0.7 0.399941
Target:  5'- aGGUgGAGGCCGcuCGcGCGCGCCUgCGc -3'
miRNA:   3'- -UUAgUUCCGGCuuGUcCGCGCGGA-GC- -5'
24060 3' -57.4 NC_005262.1 + 52246 0.72 0.28657
Target:  5'- cGUCGAGGCCgGggUAGuuGCGCGCCg-- -3'
miRNA:   3'- uUAGUUCCGG-CuuGUC--CGCGCGGagc -5'
24060 3' -57.4 NC_005262.1 + 53788 0.66 0.624132
Target:  5'- -uUCGAcgcGGCCGggUucuGCGCGCC-CGg -3'
miRNA:   3'- uuAGUU---CCGGCuuGuc-CGCGCGGaGC- -5'
24060 3' -57.4 NC_005262.1 + 54270 0.68 0.453618
Target:  5'- --aCAAGGgCGugcucgaccucgacGACGuGGCGCGCCUCu -3'
miRNA:   3'- uuaGUUCCgGC--------------UUGU-CCGCGCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 57955 0.66 0.602418
Target:  5'- ---gAGGGCgCGAGCGcgcuugaaauuGGCGCGCC-CGc -3'
miRNA:   3'- uuagUUCCG-GCUUGU-----------CCGCGCGGaGC- -5'
24060 3' -57.4 NC_005262.1 + 58194 0.73 0.258541
Target:  5'- ---gAGGGCCGGagcggagGCAGGUGCGCUUUGc -3'
miRNA:   3'- uuagUUCCGGCU-------UGUCCGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 58440 0.66 0.624132
Target:  5'- cGUCAAGGaCGccccGGCAGGCGUGCg-CGg -3'
miRNA:   3'- uUAGUUCCgGC----UUGUCCGCGCGgaGC- -5'
24060 3' -57.4 NC_005262.1 + 58599 0.68 0.486425
Target:  5'- ----uGGGCUGAu--GGgGCGCCUCGa -3'
miRNA:   3'- uuaguUCCGGCUuguCCgCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 58910 0.67 0.548711
Target:  5'- cGAUC-AGGCCGGcggcccgaccgAUGGcGCGCGCUUCu -3'
miRNA:   3'- -UUAGuUCCGGCU-----------UGUC-CGCGCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 60065 0.69 0.449723
Target:  5'- gGAUCGGGuGCaugcgcgccugauCGAGCGGGCgaaucugcuucgcgaGCGCCUCGu -3'
miRNA:   3'- -UUAGUUC-CG-------------GCUUGUCCG---------------CGCGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.