miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24060 3' -57.4 NC_005262.1 + 16598 0.67 0.517193
Target:  5'- uGGUCGAGGCgGcgaAGCAGcCGCGUUUCGa -3'
miRNA:   3'- -UUAGUUCCGgC---UUGUCcGCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 16575 0.67 0.517193
Target:  5'- ---gGAuGCCGAGCAGGCGCGUgUg- -3'
miRNA:   3'- uuagUUcCGGCUUGUCCGCGCGgAgc -5'
24060 3' -57.4 NC_005262.1 + 5167 0.68 0.506846
Target:  5'- uGAUCGGugacGGCCGGcgucgcgggcGCGGGCGCgGCCggcgCGa -3'
miRNA:   3'- -UUAGUU----CCGGCU----------UGUCCGCG-CGGa---GC- -5'
24060 3' -57.4 NC_005262.1 + 58599 0.68 0.486425
Target:  5'- ----uGGGCUGAu--GGgGCGCCUCGa -3'
miRNA:   3'- uuaguUCCGGCUuguCCgCGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 5897 0.68 0.476361
Target:  5'- cGUCGAuGUCGGGCGGGaGCGCCUUc -3'
miRNA:   3'- uUAGUUcCGGCUUGUCCgCGCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 17061 0.68 0.465412
Target:  5'- cGUCGcgcgcacGGcGCCG-AUAGGCGCGCCcgUCGa -3'
miRNA:   3'- uUAGU-------UC-CGGCuUGUCCGCGCGG--AGC- -5'
24060 3' -57.4 NC_005262.1 + 32893 0.68 0.463435
Target:  5'- ---uGAGGCCGAcgucgaacgcgaugGCcGGCGCGCCgcCGg -3'
miRNA:   3'- uuagUUCCGGCU--------------UGuCCGCGCGGa-GC- -5'
24060 3' -57.4 NC_005262.1 + 29150 0.68 0.456551
Target:  5'- --aCGAGGCCG-AguGGCGCGCgaCc -3'
miRNA:   3'- uuaGUUCCGGCuUguCCGCGCGgaGc -5'
24060 3' -57.4 NC_005262.1 + 54270 0.68 0.453618
Target:  5'- --aCAAGGgCGugcucgaccucgacGACGuGGCGCGCCUCu -3'
miRNA:   3'- uuaGUUCCgGC--------------UUGU-CCGCGCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 60065 0.69 0.449723
Target:  5'- gGAUCGGGuGCaugcgcgccugauCGAGCGGGCgaaucugcuucgcgaGCGCCUCGu -3'
miRNA:   3'- -UUAGUUC-CG-------------GCUUGUCCG---------------CGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 44142 0.69 0.446814
Target:  5'- cGUUccGGCCGGACGcGCGCGCgaUCGg -3'
miRNA:   3'- uUAGuuCCGGCUUGUcCGCGCGg-AGC- -5'
24060 3' -57.4 NC_005262.1 + 17175 0.69 0.446814
Target:  5'- -cUCGcGGCCcgccgcgucGACGGGCGCGCCuaUCGg -3'
miRNA:   3'- uuAGUuCCGGc--------UUGUCCGCGCGG--AGC- -5'
24060 3' -57.4 NC_005262.1 + 32328 0.69 0.446814
Target:  5'- -uUCAuGGGCCGucagGCAGGCGUgaucGCCUaCGg -3'
miRNA:   3'- uuAGU-UCCGGCu---UGUCCGCG----CGGA-GC- -5'
24060 3' -57.4 NC_005262.1 + 50870 0.69 0.445847
Target:  5'- --gCAGGuGCCGAcgcaaucGCAcGGCGCGCCgUCa -3'
miRNA:   3'- uuaGUUC-CGGCU-------UGU-CCGCGCGG-AGc -5'
24060 3' -57.4 NC_005262.1 + 25388 0.69 0.409064
Target:  5'- gGGUCGuaaaGCCGAGCuGGCGgGCCUUc -3'
miRNA:   3'- -UUAGUuc--CGGCUUGuCCGCgCGGAGc -5'
24060 3' -57.4 NC_005262.1 + 20816 0.69 0.406314
Target:  5'- gGGUCGAGcuGCCGAGCgacgcgaccgugauGGGCuGCGCCUuCGa -3'
miRNA:   3'- -UUAGUUC--CGGCUUG--------------UCCG-CGCGGA-GC- -5'
24060 3' -57.4 NC_005262.1 + 51950 0.7 0.399941
Target:  5'- aGGUgGAGGCCGcuCGcGCGCGCCUgCGc -3'
miRNA:   3'- -UUAgUUCCGGCuuGUcCGCGCGGA-GC- -5'
24060 3' -57.4 NC_005262.1 + 2904 0.7 0.39095
Target:  5'- --aCGAGGUCGAggcGCAGGUggaGCGCCUg- -3'
miRNA:   3'- uuaGUUCCGGCU---UGUCCG---CGCGGAgc -5'
24060 3' -57.4 NC_005262.1 + 27122 0.7 0.382091
Target:  5'- aGGUCGAuGGCgGGGCGGGC-UGCUUCGa -3'
miRNA:   3'- -UUAGUU-CCGgCUUGUCCGcGCGGAGC- -5'
24060 3' -57.4 NC_005262.1 + 49888 0.7 0.369916
Target:  5'- cGAUC-GGGCCGGACGgugcaggggcguccGGCGCggcagcggccggaGCCUCGg -3'
miRNA:   3'- -UUAGuUCCGGCUUGU--------------CCGCG-------------CGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.