miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24060 5' -65.1 NC_005262.1 + 36708 0.77 0.046575
Target:  5'- gGCAAGGCaauuuccgUUGUGGGGGCUggCGCCGCGg -3'
miRNA:   3'- gCGUUCCG--------AGCGUCCCCGG--GCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 38530 0.67 0.258149
Target:  5'- gGCAAGaGCuacacggUCGCGGugacgaucGGCaCCGCCGCGg -3'
miRNA:   3'- gCGUUC-CG-------AGCGUCc-------CCG-GGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 41160 0.73 0.086499
Target:  5'- uGCAGcGCgCGCAGgaGGGCaCCGCCGCGa -3'
miRNA:   3'- gCGUUcCGaGCGUC--CCCG-GGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 43807 0.69 0.170187
Target:  5'- aGCuuucGGGCgaUCGCGGcgacacggccgcGGGCCgGCCGCGc -3'
miRNA:   3'- gCGu---UCCG--AGCGUC------------CCCGGgCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 46422 0.97 0.001243
Target:  5'- cCGCAAGGUcCGCAGGGGCCCGCCGCGc -3'
miRNA:   3'- -GCGUUCCGaGCGUCCCCGGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 46521 0.72 0.101398
Target:  5'- gCGC-GGGCggCGCGGcGGGCCC-CUGCGg -3'
miRNA:   3'- -GCGuUCCGa-GCGUC-CCCGGGcGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 46644 0.68 0.213107
Target:  5'- uCGUcguGGGCgUCGCGGGagcggcGGCCggCGCCGCGc -3'
miRNA:   3'- -GCGu--UCCG-AGCGUCC------CCGG--GCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 48142 0.66 0.277846
Target:  5'- gGCAGGugcgaccgacgcGCUUGCGGGcgcGGCCgGCUGCu -3'
miRNA:   3'- gCGUUC------------CGAGCGUCC---CCGGgCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 48169 0.66 0.271364
Target:  5'- gCGCGucGGCgC-CGGGcGGCUCGUCGCGg -3'
miRNA:   3'- -GCGUu-CCGaGcGUCC-CCGGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 49324 0.7 0.145283
Target:  5'- gCGCAGGGCaugaccgacgaGCAGGcGCgCGCCGCGc -3'
miRNA:   3'- -GCGUUCCGag---------CGUCCcCGgGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 49895 0.68 0.228803
Target:  5'- gCGCGgccgaucGGGCcggacggUGCAGGGGCguCCGgCGCGg -3'
miRNA:   3'- -GCGU-------UCCGa------GCGUCCCCG--GGCgGCGC- -5'
24060 5' -65.1 NC_005262.1 + 50320 0.68 0.218412
Target:  5'- aGCc-GGC-CGCAGc-GCCCGCCGCGc -3'
miRNA:   3'- gCGuuCCGaGCGUCccCGGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 51281 0.74 0.084227
Target:  5'- cCGCGcGGCUC-CAGcGGG-CCGCCGCGu -3'
miRNA:   3'- -GCGUuCCGAGcGUC-CCCgGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 53506 0.67 0.235007
Target:  5'- uGCAGacGC-CGCAGGGGCCgGCC-Ca -3'
miRNA:   3'- gCGUUc-CGaGCGUCCCCGGgCGGcGc -5'
24060 5' -65.1 NC_005262.1 + 54415 0.73 0.088828
Target:  5'- gCGCAA-GCUCGCGGaGGcGCaggCCGCCGCGc -3'
miRNA:   3'- -GCGUUcCGAGCGUC-CC-CG---GGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 56026 0.72 0.109726
Target:  5'- cCGCGAuccGCaacCGCAaGGGCCCGCCGCa -3'
miRNA:   3'- -GCGUUc--CGa--GCGUcCCCGGGCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 56442 0.72 0.109726
Target:  5'- aCGCGAucuGCUCGC-GGGGCaCGCCGCc -3'
miRNA:   3'- -GCGUUc--CGAGCGuCCCCGgGCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 59277 0.67 0.24665
Target:  5'- uCGCAAGGCgcuccauCAGcGGGCCCGUgagcugcuucuuCGCGu -3'
miRNA:   3'- -GCGUUCCGagc----GUC-CCCGGGCG------------GCGC- -5'
24060 5' -65.1 NC_005262.1 + 61413 0.66 0.298031
Target:  5'- gCGCGAGGCgaagGCGGcGGCCgaggaauuccaCGUCGCGa -3'
miRNA:   3'- -GCGUUCCGag--CGUCcCCGG-----------GCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.