miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24060 5' -65.1 NC_005262.1 + 46422 0.97 0.001243
Target:  5'- cCGCAAGGUcCGCAGGGGCCCGCCGCGc -3'
miRNA:   3'- -GCGUUCCGaGCGUCCCCGGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 53506 0.67 0.235007
Target:  5'- uGCAGacGC-CGCAGGGGCCgGCC-Ca -3'
miRNA:   3'- gCGUUc-CGaGCGUCCCCGGgCGGcGc -5'
24060 5' -65.1 NC_005262.1 + 34998 0.67 0.24077
Target:  5'- aGCcGGGCa-GCAGcgcGGGCCCGuCCGUa -3'
miRNA:   3'- gCGuUCCGagCGUC---CCCGGGC-GGCGc -5'
24060 5' -65.1 NC_005262.1 + 17203 0.67 0.250836
Target:  5'- aGCAAGGC-CGUuaucaccgaggaaaAGcGGCUCGUCGCGa -3'
miRNA:   3'- gCGUUCCGaGCG--------------UCcCCGGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 38530 0.67 0.258149
Target:  5'- gGCAAGaGCuacacggUCGCGGugacgaucGGCaCCGCCGCGg -3'
miRNA:   3'- gCGUUC-CG-------AGCGUCc-------CCG-GGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 4330 0.66 0.271364
Target:  5'- gGCGAGcCUCGCGGGccguccaucGGCC-GUCGCGa -3'
miRNA:   3'- gCGUUCcGAGCGUCC---------CCGGgCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 22363 0.66 0.271364
Target:  5'- cCGCGuGGUgCGgAGGGuGUCCGgCGCGg -3'
miRNA:   3'- -GCGUuCCGaGCgUCCC-CGGGCgGCGC- -5'
24060 5' -65.1 NC_005262.1 + 61413 0.66 0.298031
Target:  5'- gCGCGAGGCgaagGCGGcGGCCgaggaauuccaCGUCGCGa -3'
miRNA:   3'- -GCGUUCCGag--CGUCcCCGG-----------GCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 70 0.66 0.305007
Target:  5'- cCGC--GGCUCGCGaagaagucGGCCgCGCCGCa -3'
miRNA:   3'- -GCGuuCCGAGCGUcc------CCGG-GCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 17096 0.68 0.229361
Target:  5'- aCGCGgcGGGC-CGCgAGGaGGUCCaCCGCGc -3'
miRNA:   3'- -GCGU--UCCGaGCG-UCC-CCGGGcGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 22206 0.68 0.218949
Target:  5'- aCGCcGGGCUCGCGcucgacaagcucacGGCCgCGCCGCc -3'
miRNA:   3'- -GCGuUCCGAGCGUcc------------CCGG-GCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 50320 0.68 0.218412
Target:  5'- aGCc-GGC-CGCAGc-GCCCGCCGCGc -3'
miRNA:   3'- gCGuuCCGaGCGUCccCGGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 36708 0.77 0.046575
Target:  5'- gGCAAGGCaauuuccgUUGUGGGGGCUggCGCCGCGg -3'
miRNA:   3'- gCGUUCCG--------AGCGUCCCCGG--GCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 41160 0.73 0.086499
Target:  5'- uGCAGcGCgCGCAGgaGGGCaCCGCCGCGa -3'
miRNA:   3'- gCGUUcCGaGCGUC--CCCG-GGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 54415 0.73 0.088828
Target:  5'- gCGCAA-GCUCGCGGaGGcGCaggCCGCCGCGc -3'
miRNA:   3'- -GCGUUcCGAGCGUC-CC-CG---GGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 56026 0.72 0.109726
Target:  5'- cCGCGAuccGCaacCGCAaGGGCCCGCCGCa -3'
miRNA:   3'- -GCGUUc--CGa--GCGUcCCCGGGCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 49324 0.7 0.145283
Target:  5'- gCGCAGGGCaugaccgacgaGCAGGcGCgCGCCGCGc -3'
miRNA:   3'- -GCGUUCCGag---------CGUCCcCGgGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 13449 0.7 0.165926
Target:  5'- cCGCGugaAGGgUCGCaAGGGcgcgaaGCCCGCgCGCGu -3'
miRNA:   3'- -GCGU---UCCgAGCG-UCCC------CGGGCG-GCGC- -5'
24060 5' -65.1 NC_005262.1 + 43807 0.69 0.170187
Target:  5'- aGCuuucGGGCgaUCGCGGcgacacggccgcGGGCCgGCCGCGc -3'
miRNA:   3'- gCGu---UCCG--AGCGUC------------CCCGGgCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 25732 0.68 0.213107
Target:  5'- gGcCGAGGCgaucgCGCAGGccGGCaaGCCGCu -3'
miRNA:   3'- gC-GUUCCGa----GCGUCC--CCGggCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.