miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24060 5' -65.1 NC_005262.1 + 25732 0.68 0.213107
Target:  5'- gGcCGAGGCgaucgCGCAGGccGGCaaGCCGCu -3'
miRNA:   3'- gC-GUUCCGa----GCGUCC--CCGggCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 46644 0.68 0.213107
Target:  5'- uCGUcguGGGCgUCGCGGGagcggcGGCCggCGCCGCGc -3'
miRNA:   3'- -GCGu--UCCG-AGCGUCC------CCGG--GCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 31724 0.68 0.207913
Target:  5'- aCGC-GGGCaUCGCcguAGGucGGCuuGCCGCGc -3'
miRNA:   3'- -GCGuUCCG-AGCG---UCC--CCGggCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 24873 0.68 0.202326
Target:  5'- uCGCGaugucgaAGuGCUCGCcc-GGCUCGCCGCGg -3'
miRNA:   3'- -GCGU-------UC-CGAGCGuccCCGGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 12748 0.69 0.18356
Target:  5'- gCGCAGGGUUCGCc---GCgCGCCGCGc -3'
miRNA:   3'- -GCGUUCCGAGCGucccCGgGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 5543 0.69 0.179002
Target:  5'- gGCGAGGUUCGCcGcGaGGUCaUGCCGCGc -3'
miRNA:   3'- gCGUUCCGAGCGuC-C-CCGG-GCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 43807 0.69 0.170187
Target:  5'- aGCuuucGGGCgaUCGCGGcgacacggccgcGGGCCgGCCGCGc -3'
miRNA:   3'- gCGu---UCCG--AGCGUC------------CCCGGgCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 13449 0.7 0.165926
Target:  5'- cCGCGugaAGGgUCGCaAGGGcgcgaaGCCCGCgCGCGu -3'
miRNA:   3'- -GCGU---UCCgAGCG-UCCC------CGGGCG-GCGC- -5'
24060 5' -65.1 NC_005262.1 + 49324 0.7 0.145283
Target:  5'- gCGCAGGGCaugaccgacgaGCAGGcGCgCGCCGCGc -3'
miRNA:   3'- -GCGUUCCGag---------CGUCCcCGgGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 24926 0.71 0.135163
Target:  5'- gCGCAGGGUgaUCgGCAcGGcGCCgGCCGCGa -3'
miRNA:   3'- -GCGUUCCG--AG-CGUcCC-CGGgCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 4406 0.71 0.12734
Target:  5'- cCGCGAGGCUCGCcguagucgacgaugAGGGGCgCGUgauugagGCGg -3'
miRNA:   3'- -GCGUUCCGAGCG--------------UCCCCGgGCGg------CGC- -5'
24060 5' -65.1 NC_005262.1 + 56442 0.72 0.109726
Target:  5'- aCGCGAucuGCUCGC-GGGGCaCGCCGCc -3'
miRNA:   3'- -GCGUUc--CGAGCGuCCCCGgGCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 56026 0.72 0.109726
Target:  5'- cCGCGAuccGCaacCGCAaGGGCCCGCCGCa -3'
miRNA:   3'- -GCGUUc--CGa--GCGUcCCCGGGCGGCGc -5'
24060 5' -65.1 NC_005262.1 + 46521 0.72 0.101398
Target:  5'- gCGC-GGGCggCGCGGcGGGCCC-CUGCGg -3'
miRNA:   3'- -GCGuUCCGa-GCGUC-CCCGGGcGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 54415 0.73 0.088828
Target:  5'- gCGCAA-GCUCGCGGaGGcGCaggCCGCCGCGc -3'
miRNA:   3'- -GCGUUcCGAGCGUC-CC-CG---GGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 41160 0.73 0.086499
Target:  5'- uGCAGcGCgCGCAGgaGGGCaCCGCCGCGa -3'
miRNA:   3'- gCGUUcCGaGCGUC--CCCG-GGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 51281 0.74 0.084227
Target:  5'- cCGCGcGGCUC-CAGcGGG-CCGCCGCGu -3'
miRNA:   3'- -GCGUuCCGAGcGUC-CCCgGGCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 36708 0.77 0.046575
Target:  5'- gGCAAGGCaauuuccgUUGUGGGGGCUggCGCCGCGg -3'
miRNA:   3'- gCGUUCCG--------AGCGUCCCCGG--GCGGCGC- -5'
24060 5' -65.1 NC_005262.1 + 46422 0.97 0.001243
Target:  5'- cCGCAAGGUcCGCAGGGGCCCGCCGCGc -3'
miRNA:   3'- -GCGUUCCGaGCGUCCCCGGGCGGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.